Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev03g2293 ATGGGCGTTCCAAGGAAAATTGAGATGAAGCTAGTGAAGAAAAAAAGTGCTAGACAAGTCACATTTTCCAAGAGAAGGAATGGAATTTTCAAGAAAGCTAGCGAGTTATCAATTCTCTGTGGTGCTATTGTTGCCATTATAGTGTTCTCTCCTGGAGGCAAATCCTATGCTTTTGGCCATCCAACTATTGACTATGTCATCAACAATTTCCTTCACCAAGGAGCTCCTAGTCCTATGGGACAAAATGTTAATGCTAAACCTTCAAGAGATGAGGACGACGACGCCGATGACGATGATGGTGGTGGTGATGGAATTGAGAGTCTCAATAAGGAGCTTGAGGATGTCATGAACAAGATTCAAGAGGAGAAGGACAAAGGGGTCAAGCTTGACAATGTTCTCATCAAGAAAGGTACTAATAAGTTCATCAAGGGTAACAAATTCAACATTGATGGTGTTGGTGTGGAGGAGCTTGCAAAATTGAAGGCTAATCTTGGAGACCTTATTGCTCATTTGGATTCCTCCATTGATATGTTGGATGTAGCATCATCATTGCTTCTTCTTGCTGAGGATTAA 573 0.4101 MGVPRKIEMKLVKKKSARQVTFSKRRNGIFKKASELSILCGAIVAIIVFSPGGKSYAFGHPTIDYVINNFLHQGAPSPMGQNVNAKPSRDEDDDADDDDGGGDGIESLNKELEDVMNKIQEEKDKGVKLDNVLIKKGTNKFIKGNKFNIDGVGVEELAKLKANLGDLIAHLDSSIDMLDVASSLLLLAED* 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev03g2293 190 SMART madsneu2 2 61 IPR002100 GO:0003677|GO:0046983
Aev03g2293 190 Gene3D - 14 84 IPR036879 GO:0003677|GO:0046983
Aev03g2293 190 CDD MADS 4 61 - -
Aev03g2293 190 PRINTS MADS domain signature 24 39 IPR002100 GO:0003677|GO:0046983
Aev03g2293 190 PRINTS MADS domain signature 4 24 IPR002100 GO:0003677|GO:0046983
Aev03g2293 190 PRINTS MADS domain signature 39 60 IPR002100 GO:0003677|GO:0046983
Aev03g2293 190 MobiDBLite consensus disorder prediction 77 107 - -
Aev03g2293 190 PANTHER MADS BOX PROTEIN 5 189 - -
Aev03g2293 190 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL29 5 189 - -
Aev03g2293 190 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 13 58 IPR002100 GO:0003677|GO:0046983
Aev03g2293 190 SUPERFAMILY SRF-like 5 73 IPR036879 GO:0003677|GO:0046983
Aev03g2293 190 ProSiteProfiles MADS-box domain profile. 5 62 IPR002100 GO:0003677|GO:0046983
Aev03g2293 190 Coils Coil 105 125 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev03g2293 Aev-Chr3 24616061 24616633 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev03g2293 5 188 Type I MADS-box Gene Family AT2G34440 33.155 7.16e-31 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Aev03g2293 SRF-TF 5.2e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev03g2293 - - lang:109341334 146.362