Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev03g2292 ATGGAGGGTGACGGTTCCAACAAGAAGAAGACGAAAGGGAAACAAAAGCGAGAGATGAAGAAGCTTGAGAATGAAAAAGATCTCTACACCACATTCTCGAAACGCAAGGATGGGATATTCAAGAAGGCCACTGAGATTAAAGCCCTAGTGGACGCTGATGCTAGCATCGTTATGTATTCTCCGTCGGGTAAGCCTTATTGCTACGGTAACCCTTCAATTGAATTCGAGACAGCGCCTCCTCCTTCGACAGCGGGGCAAAATGGTAATGATGGTGACATCTATCATCAGATTGTGAGTGAGAACAAGAGGCTTGAGTTCCAGCAACTCAAGGGGAAGCATGATGCGTTTGTTGATGAAATTCACGCTGAGAGAGAAAAGAAGAAACAACTTGAGAGGGATTTGGAGAAAAAGACTGGCAATGATTCATGGGAGATTAGTAAGGATTTTCAAAATCCTAAAGATTTTGAGGCTTCTCTTGTGGACATTCAGAGCAAATTGAAAGATAGACTTTCACTTCATGGTGAAGGTAAAGCAGCCACCAAGGATGCTGGTGCTGGTGGAAGTGGTTAG 570 0.4404 MEGDGSNKKKTKGKQKREMKKLENEKDLYTTFSKRKDGIFKKATEIKALVDADASIVMYSPSGKPYCYGNPSIEFETAPPPSTAGQNGNDGDIYHQIVSENKRLEFQQLKGKHDAFVDEIHAEREKKKQLERDLEKKTGNDSWEISKDFQNPKDFEASLVDIQSKLKDRLSLHGEGKAATKDAGAGGSG* 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev03g2292 189 Coils Coil 113 140 - -
Aev03g2292 189 PRINTS MADS domain signature 49 70 IPR002100 GO:0003677|GO:0046983
Aev03g2292 189 PRINTS MADS domain signature 34 49 IPR002100 GO:0003677|GO:0046983
Aev03g2292 189 PRINTS MADS domain signature 14 34 IPR002100 GO:0003677|GO:0046983
Aev03g2292 189 SMART madsneu2 12 71 IPR002100 GO:0003677|GO:0046983
Aev03g2292 189 PANTHER AGAMOUS-LIKE 58-RELATED 11 172 - -
Aev03g2292 189 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 21 68 IPR002100 GO:0003677|GO:0046983
Aev03g2292 189 ProSiteProfiles MADS-box domain profile. 12 72 IPR002100 GO:0003677|GO:0046983
Aev03g2292 189 MobiDBLite consensus disorder prediction 125 147 - -
Aev03g2292 189 PANTHER MADS BOX PROTEIN 11 172 - -
Aev03g2292 189 SUPERFAMILY SRF-like 13 73 IPR036879 GO:0003677|GO:0046983
Aev03g2292 189 MobiDBLite consensus disorder prediction 1 22 - -
Aev03g2292 189 MobiDBLite consensus disorder prediction 170 189 - -
Aev03g2292 189 Gene3D - 24 80 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev03g2292 Aev-Chr3 24612487 24613188 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev03g2292 9 188 Type I MADS-box Gene Family AT3G04100 32.065 1.57e-19 80.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Aev03g2292 SRF-TF 3.6e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev03g2292 - K12412 adu:107457638 117.472