Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev03g2257 ATGGTGAAAATCTCGTTTGGTGGATATGATGATGGGGAAGGGCCTAGCAATAATCCTTCCCACAAGCGACGCAGGGTGGAACGAGAAGACCAACAACAACAACAAGGCTCTGAGATCGAAGACCAACCAAGTGGAACCGATGAGGAGGATGAGGCGGAACAACGACGCGGACACGATGGTGGAGCTGAAGAGCGTGCTCCGGCAGGCCATGAAACCGTTGGATCGAACGCAGATCGAGGAGAAAATAGTGGGTCTGCAACGGATGATACGGATAGGTCCATTTCTGTGACCATCACCGACCCTGATGTCCTTGATTGCTGCATTTGCTATGAACCCTTGAGTGCCCCTGTTTTCCAGTGTGAGAATGGGCATATTGCTTGCTCTAATTGCTGTGCCAGGCTTGGCAACAAGTGCCCCATGTGCTCAATGCCCATTGGCTATAACCGTTGCAGAGCTATTGAGAAGGTGCTGGAAACTATTAAAATATCTTGCCTTAATGCAAAATATGGTTGTAAAGAGAAGTTTAGTTATAGTAGGAAAAATGGCCATGAGAAGGAATGCTTCTATATACCATGTTCATGCCCACATGCAGTCTTCTTAAATATTGACCACAAAACAATTGTTCTTCAAGAGAAAAATGATGCTAACCTATTTGTTGTTCACAATATCCATGAGTTTTTGGGGAATTTAGTCCATATAACTTGCATTGGACCCAAATCGAGAACAGGGTTTCATTATGATATCTTGGCTAGGTCTCAGGGAAACTCTCTAATATTGCAGTCTTTTACAAAGATCATTCAGGGCCAATATGCTGGTGCTCTTTCAACAGGGCTTCTTTTGATTCCTTCTCATTTTTTCGGTTCTGGACCAATCAAACTGGATATACGCATAAGGTCACAACTTCAAACCTTGTCTGGAGATTAA 924 0.4405 MVKISFGGYDDGEGPSNNPSHKRRRVEREDQQQQQGSEIEDQPSGTDEEDEAEQRRGHDGGAEERAPAGHETVGSNADRGENSGSATDDTDRSISVTITDPDVLDCCICYEPLSAPVFQCENGHIACSNCCARLGNKCPMCSMPIGYNRCRAIEKVLETIKISCLNAKYGCKEKFSYSRKNGHEKECFYIPCSCPHAVFLNIDHKTIVLQEKNDANLFVVHNIHEFLGNLVHITCIGPKSRTGFHYDILARSQGNSLILQSFTKIIQGQYAGALSTGLLLIPSHFFGSGPIKLDIRIRSQLQTLSGD* 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev03g2257 307 MobiDBLite consensus disorder prediction 1 94 - -
Aev03g2257 307 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 21 196 - -
Aev03g2257 307 CDD RING-HC_SIAHs 104 142 - -
Aev03g2257 307 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 197 299 IPR044286 -
Aev03g2257 307 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 21 196 IPR044286 -
Aev03g2257 307 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 101 149 IPR013083 -
Aev03g2257 307 MobiDBLite consensus disorder prediction 49 66 - -
Aev03g2257 307 MobiDBLite consensus disorder prediction 16 35 - -
Aev03g2257 307 SUPERFAMILY RING/U-box 105 148 - -
Aev03g2257 307 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 154 206 IPR013083 -
Aev03g2257 307 SUPERFAMILY TRAF domain-like 160 298 - -
Aev03g2257 307 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 197 299 - -
Aev03g2257 307 ProSiteProfiles Zinc finger RING-type profile. 106 142 IPR001841 -
Aev03g2257 307 ProSiteProfiles Zinc finger SIAH-type profile. 159 222 IPR013010 GO:0008270
Aev03g2257 307 MobiDBLite consensus disorder prediction 76 94 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev03g2257 Aev-Chr3 24423347 24425418 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev03g2257 102 197 C3H Transcription Factor Family AT2G41980 39.583 1.59e-19 85.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev03g2257 K04506 - gmx:100778869 364.77