Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev03g2230 ATGTCATTTCGAAGCATAGTTCGTGATGTGAGGGGTAGTTTTGGGAGCTTGTCTATGAGGAGTTTTGATGTCAGGCTTCCTGTTGGCCATCATAGAGGAAAATCCCATGGGTCCTTCCAAGATTTGCACGACCAGCCTTTTGTAGTGCAAAATAGTTGCTGGGCTAGCTTGCCCCCCGAATTACTATATGATGTCATTAGAAGACTGGAGGAGAGTGAGAGTACATGGCCTGCTCGAAAGCATGTCGTTGCATGTGCTGCAGTATGCCGGTCTTGGAGGAATATGTGCAAGGAAATTGTGAAGGGTCCAGAGTTCTGTGGCAAACTTACATTTCCTGTGTCCCTGAAACAGCCAGGGCCACGCGATGGAACCATTCAGTGTTTTATCAAAAGAGATAAATCAAACTTAACATACCATCTATTCCTTTGTCTCAGCCCTGCCTTGTTGGTTGAAAATGGAAAATTCCTCCTTTCTGCCAAGAGGACAAGGAGGACAACTTACACAGAATATGTCATTTCAATGGATGCTGACAACATATCTAGATCAAGTAGCACGTACATTGGAAAGCTGAGATCAAACTTTCTTGGCACCAAATTCATTATATACGATACACAGCCTCCATACAGTGCTGCCAATGTACCTTCTCCTGGGACTGGGAGGACGAGCAAGAGATTTTATTCCAAAAAGGTATCTCCAAAGGTCCCATCTGGTAGTTACAACATAGCTCAGGTAACATATGAACTGAATGTGCTTGGTACACGAGGCCCCCGGAGGATGCATTGCGTTATGCATTCAATACCAATGTCTGCACTTGATGCGGGTGGCACCGTTCCTGGTCAACCAGAACTTCTTCCTCGCACTTTGGAGGACTCGTTTCGGAGCATCTCCTTTTCAAAGTCCCTAGATCACTCTATTGAGTTCAGCAGTTCACGATTTTCTGAGATTGGGGGATCCTCTAACGAAGACGAGGATGACAAGACTAGGCCCTTGGTTCTGAAAAACAAGTCTCCAAGATGGCATGAGCAGTTACAATGCTGGTGCCTTAACTTCCGGGGACGGGTGACAGTTGCATCTGTGAAGAACTTTCAGTTGATTGCTGCCATGCAGCCACCTGCCGGTGCACCCACACCATCTCAGCCGCCCCCTCCAGAGCATGATAAGGTAATTCTGCAGTTTGGCAAAGTTGGGAAAGATATGTTCACTATGGATTACCGGTATCCACTATCTGCATTCCAGGCATTTGCAATATGCCTGAGCAGCTTTGACACCAAATTGGCATGTGAATAA 1287 0.4623 MSFRSIVRDVRGSFGSLSMRSFDVRLPVGHHRGKSHGSFQDLHDQPFVVQNSCWASLPPELLYDVIRRLEESESTWPARKHVVACAAVCRSWRNMCKEIVKGPEFCGKLTFPVSLKQPGPRDGTIQCFIKRDKSNLTYHLFLCLSPALLVENGKFLLSAKRTRRTTYTEYVISMDADNISRSSSTYIGKLRSNFLGTKFIIYDTQPPYSAANVPSPGTGRTSKRFYSKKVSPKVPSGSYNIAQVTYELNVLGTRGPRRMHCVMHSIPMSALDAGGTVPGQPELLPRTLEDSFRSISFSKSLDHSIEFSSSRFSEIGGSSNEDEDDKTRPLVLKNKSPRWHEQLQCWCLNFRGRVTVASVKNFQLIAAMQPPAGAPTPSQPPPPEHDKVILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE* 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev03g2230 428 Pfam Tub family 115 423 IPR000007 -
Aev03g2230 428 ProSitePatterns Tub family signature 1. 350 363 IPR018066 -
Aev03g2230 428 Gene3D Tubby Protein; Chain A 113 422 IPR025659 -
Aev03g2230 428 PRINTS Tubby superfamily signature 385 404 IPR000007 -
Aev03g2230 428 PRINTS Tubby superfamily signature 332 349 IPR000007 -
Aev03g2230 428 PRINTS Tubby superfamily signature 406 428 IPR000007 -
Aev03g2230 428 PRINTS Tubby superfamily signature 350 366 IPR000007 -
Aev03g2230 428 PRINTS Tubby superfamily signature 170 186 IPR000007 -
Aev03g2230 428 PRINTS Tubby superfamily signature 186 210 IPR000007 -
Aev03g2230 428 PRINTS Tubby superfamily signature 238 265 IPR000007 -
Aev03g2230 428 SUPERFAMILY F-box domain 50 98 IPR036047 GO:0005515
Aev03g2230 428 ProSitePatterns Tub family signature 2. 413 428 IPR018066 -
Aev03g2230 428 PANTHER TUBBY-LIKE F-BOX PROTEIN 10-RELATED 1 428 - -
Aev03g2230 428 Pfam F-box domain 54 100 IPR001810 GO:0005515
Aev03g2230 428 SUPERFAMILY Tubby C-terminal domain-like 103 428 IPR025659 -
Aev03g2230 428 Gene3D - 49 99 - -
Aev03g2230 428 PANTHER TUBBY-RELATED 1 428 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev03g2230 Aev-Chr3 24284580 24286539 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev03g2230 1 428 TUB Transcription Factor Family AT1G76900 69.197 0.0 607
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Aev03g2230 Tub 7.6e-118 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev03g2230 K19600 - gmx:100814578 764.992
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev03g2230 03 24284580 24286539 Aev03g2230 03 24284580 24286539 ECH