Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev03g2220 ATGTCGGATGTGGAAGAATATCGTTGTTTTATTGGTGGCCTTGCATGGTCAACATCTGATAGAAAGCTGAAGGATACATTTGAAAAGTTTGGCAACCTCATTGAGGCAAAGGTGGTTGTTGACAAATTCTCTGGGCGCTCTCGTGGTTTTGGATTTGTCACATTTGATGAAAAGAAAGCAATGGAAGATGCTATTGATGCTATGAATGGGATGGATTTAGATGGAAGGACAATTACTGTTGATAAAGCTCAGCCTCAACAAGGATCAAGTAGGGATGATGGTGATCGCCACCGAGACCGTGACCGAGACCGTGGTCGTGATCGCGATCGTAACAGAGATTATGGAGGTGGTCGAGGATCTAATGGTGGCGAATGCTTTAAGTGTGGTAAACCTGGTCATTTTGCTAGGGAGTGCCCTAGTGAAGGGGGAAGAGGGGGTAGGTATGGTGGCAGAGATGGTGGCAGAGATGGTGGCAGGGATGGTGGTAGGGAAGGTGGTAGATATGGTGGAAGCAGTGGAGGTGGCCACTATGGTCCTGATAGAAATGCAGATCGTTCTTCTGGTGGGCGCAGCAGGGATTCTGGTAGAGATGGAGACTCTGGAAATGATCGATACTATCGTGATCGTGCTGGACCATATGAACGACGGGGATCAGGAGGTGCTCGTTGA 669 0.4828 MSDVEEYRCFIGGLAWSTSDRKLKDTFEKFGNLIEAKVVVDKFSGRSRGFGFVTFDEKKAMEDAIDAMNGMDLDGRTITVDKAQPQQGSSRDDGDRHRDRDRDRGRDRDRNRDYGGGRGSNGGECFKCGKPGHFARECPSEGGRGGRYGGRDGGRDGGRDGGREGGRYGGSSGGGHYGPDRNADRSSGGRSRDSGRDGDSGNDRYYRDRAGPYERRGSGGAR* 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev03g2220 222 SMART c2hcfinal6 124 140 IPR001878 GO:0003676|GO:0008270
Aev03g2220 222 MobiDBLite consensus disorder prediction 183 215 - -
Aev03g2220 222 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 10 79 IPR000504 GO:0003723
Aev03g2220 222 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN RZ1A 1 175 - -
Aev03g2220 222 SUPERFAMILY RNA-binding domain, RBD 4 117 IPR035979 GO:0003676
Aev03g2220 222 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 85 IPR000504 GO:0003723
Aev03g2220 222 SMART rrm1_1 8 81 IPR000504 GO:0003723
Aev03g2220 222 Gene3D - 2 120 IPR012677 -
Aev03g2220 222 SUPERFAMILY Retrovirus zinc finger-like domains 107 144 IPR036875 GO:0003676|GO:0008270
Aev03g2220 222 MobiDBLite consensus disorder prediction 148 163 - -
Aev03g2220 222 MobiDBLite consensus disorder prediction 88 115 - -
Aev03g2220 222 MobiDBLite consensus disorder prediction 76 222 - -
Aev03g2220 222 ProSiteProfiles Zinc finger CCHC-type profile. 125 140 IPR001878 GO:0003676|GO:0008270
Aev03g2220 222 PANTHER TRANSFORMER-2-RELATED 1 175 - -
Aev03g2220 222 Gene3D - 121 192 - -
Aev03g2220 222 Pfam Zinc knuckle 124 140 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev03g2220 Aev-Chr3 24237044 24238019 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev03g2220 9 84 Eukaryotic Initiation Factors Gene Family AT4G34110 32.895 6.11e-07 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev03g2220 - - gmx:100815224 260.381