Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev03g2172 ATGGAAAACGACGACGTTGATATGCTCGGCGCTGACAACACCGAAGCTGATTTGGATGACATGAAGAAGCGCTTGAAGGAGATGGAAGATGAAGCTGCTGCTTTGCGGGAGATGCAGGCCAAAGTCGAGAAGGAGATGGGATCTGTGCAAGATCCTGCGACTGCTGCTGGAAGTCAGACCAATAGAGAAGAAGTAGATTCTCGATCAGTCTTTGTAGGCAATGTGGACTATTCATGCACTCCTGAAGAAGTGCAGCAGCATTTCCAATCATGTGGAACAGTGAACCGAGTCACCATTCGCACTGATAAGTTTGGCCAGCCCAAGGGCTATGCTTATGTAGAGTTTCTCGAAGTGGAGGCTGTTCAAGAGGCCCTTCTGCTGAATGAATCTGAACTACATGGGCGCCAATTGAAGGTGACTGCTAAGAGGACTAACATACCAGGGATGAAGCAGTATCGACCGCGCCGGCCCAATCCTTACATGGGGTTTCGAGGCAGAGCCCCATACGCACCTCCTTTTGCCTTTGCTCCATATGGATACGGAAAGGTTCCAAGGTTCAGGATGGCAATGCGCTACAGCCCCTACTATTGA 591 0.5008 MENDDVDMLGADNTEADLDDMKKRLKEMEDEAAALREMQAKVEKEMGSVQDPATAAGSQTNREEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLEVEAVQEALLLNESELHGRQLKVTAKRTNIPGMKQYRPRRPNPYMGFRGRAPYAPPFAFAPYGYGKVPRFRMAMRYSPYY* 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev03g2172 196 CDD RRM_II_PABPs 69 140 - -
Aev03g2172 196 SMART rrm1_1 69 140 IPR000504 GO:0003723
Aev03g2172 196 MobiDBLite consensus disorder prediction 43 66 - -
Aev03g2172 196 Coils Coil 11 45 - -
Aev03g2172 196 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 70 138 IPR000504 GO:0003723
Aev03g2172 196 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 4 193 - -
Aev03g2172 196 SUPERFAMILY RNA-binding domain, RBD 60 166 IPR035979 GO:0003676
Aev03g2172 196 Gene3D - 6 141 IPR012677 -
Aev03g2172 196 PANTHER - 4 193 - -
Aev03g2172 196 MobiDBLite consensus disorder prediction 52 66 - -
Aev03g2172 196 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 68 144 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev03g2172 Aev-Chr3 23951252 23955211 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev03g2172 69 139 Eukaryotic Initiation Factors Gene Family AT2G36660 31.944 9.39e-08 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev03g2172 K14396 - mnt:21400190 340.502
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev03g2172 03 23951252 23955211 Aev04g0794 04 4866793 4869430 PCT