Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev03g2144 ATGACAAGGAAGAAGATCCAGATCAAGAAAATCGACAACATAAGTTCAAGGCAGGTTACCTTCTCAAAGAGGAGGAAAGGGCTTTTCAAGAAGGCTCAGGAGCTTTCTACTCTCTGTGATGCAGATATTGCCCTCATTGTCTTCTCTGCAACTAACAAGCTCTTCCACTATTCATCTTCAAGTATAGATCAAGTGATTGAAAAACGCAATCGCCATTCAACAATTTATAAAACAGACCCTTCATCTATTGCGATGCTTCAGGTTGAGAGTGAGTTCAACAATGATATGCTGAGGAAGAAAGAAGAAGAGAAATCTCGTGAATTAAGGCAGTTGAATGGGGAAGATCTGCAAGAATTGACACTACAAGAACTACAGAAACTAGAGGAACAACTTATAAGAGGTTTCACTTGTGCTTCAAAAGCCAAGGATGAAAAACTTATGCACGAGATCAGCACCCTTAAGAGAAAGGGAGTAGAATTGATGGCAGAGAACCAAAAATTCAAAGAGATATCAAGGCTTAGGAATGGGCAAATGCAGTCATTTGAATCCACTGTCTGCAGTTCATCTTATCTTCCTCAAGAACATGGTATAAGTGATACATCTCTGAGGTTGGGGCTACCCTAA 624 0.4006 MTRKKIQIKKIDNISSRQVTFSKRRKGLFKKAQELSTLCDADIALIVFSATNKLFHYSSSSIDQVIEKRNRHSTIYKTDPSSIAMLQVESEFNNDMLRKKEEEKSRELRQLNGEDLQELTLQELQKLEEQLIRGFTCASKAKDEKLMHEISTLKRKGVELMAENQKFKEISRLRNGQMQSFESTVCSSSYLPQEHGISDTSLRLGLP* 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev03g2144 207 CDD MADS_MEF2_like 3 73 IPR033896 GO:0000977|GO:0045944
Aev03g2144 207 SUPERFAMILY SRF-like 2 77 IPR036879 GO:0003677|GO:0046983
Aev03g2144 207 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Aev03g2144 207 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Aev03g2144 207 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Aev03g2144 207 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Aev03g2144 207 ProSiteProfiles K-box domain profile. 87 184 IPR002487 GO:0003700|GO:0005634|GO:0006355
Aev03g2144 207 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Aev03g2144 207 Pfam K-box region 94 169 IPR002487 GO:0003700|GO:0005634|GO:0006355
Aev03g2144 207 PANTHER MADS-BOX PROTEIN AGL24-LIKE ISOFORM X1 1 184 - -
Aev03g2144 207 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 184 - -
Aev03g2144 207 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Aev03g2144 207 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Aev03g2144 207 Coils Coil 94 114 - -
Aev03g2144 207 Gene3D - 13 81 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev03g2144 Aev-Chr3 23787583 23791344 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev03g2144 1 207 MADS-box Gene Family AT2G22540 44.167 2.52e-53 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Aev03g2144 K-box 1.4e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev03g2144 - - aprc:113860188 251.906
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev03g2144 03 23787583 23791344 Aev04g0766 04 4719581 4722568 PCT