Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev03g2143 ATGGGGCCGTGGTGGGAGGGCGAGTACGAGGGAGAGAGGGGTGGAGCTGTGCGTACGAGGGTTTCATTATTTGTCACTGTCACCTCGCCATCCAACGCAGCATACCCATGGACGTGCGGGAATGAAATGACTCGGAGGAGTATAGAGATAAAGAGAATCGAGAAGGTGAGTTCAAGGCAGGTTGCGTTTTCAAAGAGGAGGAAAGGGCTTTTCAAGAAAGCTCAGGAGCTCTCTACTCTTTGTGATGCAGACATTGCTCTCATTGTCTTCTCCGCAACTACCAAGCTCTTCCACTATTCATCTTCAAGCATGGAACAAGTAATCGAAAGGCGTACTCGGCATCCAGTGATTCATAGATCAGGCAATTCATCAATTGCGCTGCAGGTTGATAGTGAATCCAACTGTGATATGTTGCGCAAGAAAGAAGATGAAAGGACTCGTGAACTGAGGCAATTGAATGGGGAAGATCTTCAAGGAATGACACTACAAGAACTTCAGAAACTAGAGGAACAACTTATAAGAGGTTTCATCAGTGTTTCCAAAGCTAAGGATGAAAAACTTATGCAAGAGATCAGCACCCTAAAGAGAAAGGGAGTAGAACTGACAGCAGAGAACCGTAAATTGAACCAGAAATCTAGTGTGGAGCTTGATGAGCATGGACAAATTAGGCGTTCATCTTGTTGCTTTCCTGATCAAAATATTGGTGGTTGTGACACTGACACATCTCTCAAGCTGGGGTTACCTTAA 747 0.4525 MGPWWEGEYEGERGGAVRTRVSLFVTVTSPSNAAYPWTCGNEMTRRSIEIKRIEKVSSRQVAFSKRRKGLFKKAQELSTLCDADIALIVFSATTKLFHYSSSSMEQVIERRTRHPVIHRSGNSSIALQVDSESNCDMLRKKEDERTRELRQLNGEDLQGMTLQELQKLEEQLIRGFISVSKAKDEKLMQEISTLKRKGVELTAENRKLNQKSSVELDEHGQIRRSSCCFPDQNIGGCDTDTSLKLGLP* 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev03g2143 248 ProSiteProfiles MADS-box domain profile. 43 103 IPR002100 GO:0003677|GO:0046983
Aev03g2143 248 CDD MADS_MEF2_like 45 110 IPR033896 GO:0000977|GO:0045944
Aev03g2143 248 SMART madsneu2 43 102 IPR002100 GO:0003677|GO:0046983
Aev03g2143 248 ProSiteProfiles K-box domain profile. 128 222 IPR002487 GO:0003700|GO:0005634|GO:0006355
Aev03g2143 248 PANTHER MADS-BOX PROTEIN AGL24-LIKE ISOFORM X1 43 219 - -
Aev03g2143 248 Gene3D - 56 148 IPR036879 GO:0003677|GO:0046983
Aev03g2143 248 SUPERFAMILY SRF-like 44 120 IPR036879 GO:0003677|GO:0046983
Aev03g2143 248 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 52 99 IPR002100 GO:0003677|GO:0046983
Aev03g2143 248 Pfam K-box region 132 211 IPR002487 GO:0003700|GO:0005634|GO:0006355
Aev03g2143 248 Coils Coil 191 211 - -
Aev03g2143 248 PRINTS MADS domain signature 80 101 IPR002100 GO:0003677|GO:0046983
Aev03g2143 248 PRINTS MADS domain signature 65 80 IPR002100 GO:0003677|GO:0046983
Aev03g2143 248 PRINTS MADS domain signature 45 65 IPR002100 GO:0003677|GO:0046983
Aev03g2143 248 PANTHER SERUM RESPONSE FACTOR HOMOLOG 43 219 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev03g2143 Aev-Chr3 23779649 23784798 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev03g2143 43 248 MADS-box Gene Family AT2G22540 38.397 1.80e-46 153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Aev03g2143 K-box 6.7e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev03g2143 - - gmx:100815814 237.269