Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev03g2118 ATGGGGAGAGGAAAAATAGTGATAAGGAGGATAGACAATACGACAAGCAGGCAAGTGACTTTCTCAAAGAGAAGAAGTGGGTTGATGAAGAAAGCTAGAGAACTATCTATTCTATGTGATGCTGAAGTTGGATTGATCGTATTCTCTTGCACTGGCAAGCTTTATGACTTTGCAAGCACCAGCATGAGATCTGTCATTGAGCGCTATAACAAACTAAAAGAGGACCATCATCATCCGCTAATGAATCCTGCTTCTGAAGTCAAGAGAGAAGCAGCAACCTTGAGACAACAACTTCAGTACTTGCAGGAAAGCCATAGGCAATTAATGGGAGAACAGCTATCTGGTTTGGGTGTTAAAGAGCTACAAAATCTGGAAGATCAACTTGAGATGAGTCTAAAGGGTGTCCGCATGCAAAAGGGAAAAGAAATTCATGAGGAAAACGTAGAACTTCATAAGAAGATAGAGGTGATGCGTAGGGAAAATGCAGAACTACATAAGGTGATTGAAGCACATGGTGGTGGTAGGAAGAATAATAATAATAATGCAGCACCGAATCCTGCATATGCTATGACTATGATGAGCTATGGATATGGTGCTGCTGCTGCTGCGCCTCCTATCACTCTCCATCTAAGCCACCCACCACCTGCCGCAGCAGCAGCTCAATACTCTCACACTCAACCAGTTCCAACCAAAGCAAAGAAACTCAGACAAGCTAAGAGAAGCGAAGCCGATCTTTTATAA 741 0.4291 MGRGKIVIRRIDNTTSRQVTFSKRRSGLMKKARELSILCDAEVGLIVFSCTGKLYDFASTSMRSVIERYNKLKEDHHHPLMNPASEVKREAATLRQQLQYLQESHRQLMGEQLSGLGVKELQNLEDQLEMSLKGVRMQKGKEIHEENVELHKKIEVMRRENAELHKVIEAHGGGRKNNNNNAAPNPAYAMTMMSYGYGAAAAAPPITLHLSHPPPAAAAAQYSHTQPVPTKAKKLRQAKRSEADLL* 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev03g2118 246 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Aev03g2118 246 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Aev03g2118 246 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Aev03g2118 246 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Aev03g2118 246 Coils Coil 118 138 - -
Aev03g2118 246 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 216 - -
Aev03g2118 246 Coils Coil 84 104 - -
Aev03g2118 246 Pfam K-box region 85 168 IPR002487 GO:0003700|GO:0005634|GO:0006355
Aev03g2118 246 PANTHER MADS-BOX TRANSCRIPTION FACTOR 1 216 - -
Aev03g2118 246 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Aev03g2118 246 ProSiteProfiles K-box domain profile. 84 174 IPR002487 GO:0003700|GO:0005634|GO:0006355
Aev03g2118 246 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Aev03g2118 246 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
Aev03g2118 246 SUPERFAMILY SRF-like 2 77 IPR036879 GO:0003677|GO:0046983
Aev03g2118 246 MobiDBLite consensus disorder prediction 217 246 - -
Aev03g2118 246 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Aev03g2118 246 Gene3D - 13 93 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev03g2118 Aev-Chr3 23661959 23664840 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev03g2118 1 166 MADS-box Gene Family AT4G37940 66.864 2.27e-77 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Aev03g2118 K-box 7.1e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev03g2118 K09264 - sind:105169300 263.848
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev03g2118 03 23661959 23664840 Aev04g0746 04 4614054 4617640 PCT