Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev03g2103 ATGGAGATTTCATCCATCAGAGGGTTACCTGATCTGGAAATAATGGAGGATCCTTTTCTCCATCAGTGGCAGTTGAGCTCTGTTGATGAGCCAAGTTTACTACCAATTGCTGCTGCTTTTGGAGAGAGTTTACAACATCATTCATTCTCTTACCAAAACTTTAACCCCAAAACTTCGATGGAAACTTCAGCACTTGCTAGCTCTGAAATTAGACCCACAAAACATCTCAAGAACAACAACAGCTGGAGTGTAAGCAGAAATGCTCAGACATCAGAGGCACAATTTGCTTCTTGCCCAGATATTCTTTCATTTGTGGATTCCAGTTACATAAATCAGTTGGAATTGGTGAAGGCTAAGGGTGAGATGATTTGTCCTAGAGACATGATCTCTCATCAAGGAACATTGGGGAATCAAAACTATGTGTTCAAGTCCAGCCAGGAAGCTAAACAGATAGGGCCGCGTCCTAAACTTTCTCAACCTCATGACCATATAATAGCTGAGAGGAAGCGGCGAGAGAAGCTCAGCCAACGGTTTATCGCTCTATCTGCCCTTGTTCCTGGACTACAGAAGACAGACAAAGCTTCTGTTCTTGGAGATGCTATCAAGTACTTGAAGCAATTGCAAGAGAAAGTTAAGGCTCTTGAGGAGGAACAGAACATGAAGAAAACTGTGGAATCTGTGGTAGTTGTGAAGAAGTCTCAGTTATCCAACAATGCACAAGACTCTTGTTCAGAATCTGGTGGTCCCTTTGATGAGGCACTACCAGAAATTGAGGCAAGATTTTGTGACAGGAATGTTCTCATAAGAATTCACTGTGAGAAGAACAGAGGAGTTGTAGAAAAGACAATCAATGAAATTGAGAAACTCCATCTAAAAGTCACCAATAGTAGTGCCATGACATTTGGGAATTGTGCCCTTGATATAACAGTTATTGCTCAGTTCATAGAAATGGAAGCACATATAGCAGCCAATCAGCGTATTGCAAGAATCACTGCTCATCTTCGGCCTTCAAATTTCAAGGAAGGAGGTGATGTTCTGGTTGAGAGAGGTGAGTGCAGAGCAAAAGGGGGGTCGCCAGGATTCAAAGTTGCAATCTTGGGGGCTGCCGGTGGAATTGGGCAATCCCTTTCTTTGCTGATGAAGATGAACCCTTTGGTCTCAGTTCTTCATCTTTATGATGTTGTCAACTCCCCTGGTGTCACAGCTGATGTTAGTCACATGGATACTGGTGCTGTGGTTCGTGGCTTTTTGGGGCAGCCTCAACTTGAGAATGCACTCACTGGCATGGACTTAGTGATTATACCTGCTGGTGTCCCAAGGAAACCTGGAATGACAAGGGACGATTTGTTCAAAATAAATGCTGGAATTGTGAGGACTCTCTGTGAAGGCATTGCCAAGTGCTGCCCCAATGCAATTGTCAACTTGATTAGCAATCCTGTGAATTCAACTGTTGCTATTGCTGCCGAGGTTTTCAAAAAGGCTGGTACATATGATCCGAAGCGCCTGCTAGGCGTTACAACCCTGGACGTCGTGAGGGCAAATACTTTTGTGGCAGAGGTACTCGGAGTGGATCCAAGAGAGGTTGATGTTCCTGTGGTGGGAGGTCATGCAGGAGTCACAATATTGCCACTTTTGTCACAGGTTAAGCCTCCCAGTAGCTTCACTGCAGAAGAAACTGAATACCTGACAAATCGCATCCAAAATGGTGGGACAGAAGTTGTTGAGGCAAAAGCAGGAGCTGGTTCTGCTACACTTTCAATGGCTTATGCAGCTGCCAAGTTTGCCGACGCATGCCTCCGTGGCTTGAAGGGAGAAGCTGGAGTGGTGGAATGTGCCTTTGTTGATTCTCAGGTCACAGAACTTCCCTTCTTTGCAAGCAAGGTACGCCTTGGTCGTGTTGGAGCAGAGGAGGTGTTCCAACTGGGTCCCTTGAATGAGTATGAAAGGATTGGGTTGGAGAAAGCAAAGAAAGAGTTAGCAGGAAGCATCCAGAAAGGGATAGAATTCATCAGAAAATAA 2019 0.4487 MEISSIRGLPDLEIMEDPFLHQWQLSSVDEPSLLPIAAAFGESLQHHSFSYQNFNPKTSMETSALASSEIRPTKHLKNNNSWSVSRNAQTSEAQFASCPDILSFVDSSYINQLELVKAKGEMICPRDMISHQGTLGNQNYVFKSSQEAKQIGPRPKLSQPHDHIIAERKRREKLSQRFIALSALVPGLQKTDKASVLGDAIKYLKQLQEKVKALEEEQNMKKTVESVVVVKKSQLSNNAQDSCSESGGPFDEALPEIEARFCDRNVLIRIHCEKNRGVVEKTINEIEKLHLKVTNSSAMTFGNCALDITVIAQFIEMEAHIAANQRIARITAHLRPSNFKEGGDVLVERGECRAKGGSPGFKVAILGAAGGIGQSLSLLMKMNPLVSVLHLYDVVNSPGVTADVSHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFKINAGIVRTLCEGIAKCCPNAIVNLISNPVNSTVAIAAEVFKKAGTYDPKRLLGVTTLDVVRANTFVAEVLGVDPREVDVPVVGGHAGVTILPLLSQVKPPSSFTAEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAAKFADACLRGLKGEAGVVECAFVDSQVTELPFFASKVRLGRVGAEEVFQLGPLNEYERIGLEKAKKELAGSIQKGIEFIRK* 673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev03g2103 672 Gene3D - 158 232 IPR036638 GO:0046983
Aev03g2103 672 SMART finulus 164 213 IPR011598 GO:0046983
Aev03g2103 672 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 158 207 IPR011598 GO:0046983
Aev03g2103 672 PANTHER MALATE AND LACTATE DEHYDROGENASE 318 672 - -
Aev03g2103 672 Coils Coil 197 224 - -
Aev03g2103 672 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 162 222 IPR036638 GO:0046983
Aev03g2103 672 ProSitePatterns Malate dehydrogenase active site signature. 505 517 IPR001252 GO:0006108|GO:0016615
Aev03g2103 672 Pfam Helix-loop-helix DNA-binding domain 163 208 IPR011598 GO:0046983
Aev03g2103 672 CDD MDH_glyoxysomal_mitochondrial 361 670 IPR010097 GO:0006099|GO:0030060
Aev03g2103 672 Gene3D - 353 505 - -
Aev03g2103 672 PANTHER MALATE DEHYDROGENASE 2, PEROXISOMAL 318 672 - -
Aev03g2103 672 Pfam lactate/malate dehydrogenase, alpha/beta C-terminal domain 506 669 IPR022383 GO:0016616
Aev03g2103 672 Gene3D - 506 672 IPR015955 GO:0003824|GO:0016616
Aev03g2103 672 TIGRFAM MDH_euk_gproteo: malate dehydrogenase, NAD-dependent 362 671 IPR010097 GO:0006099|GO:0030060
Aev03g2103 672 SUPERFAMILY LDH C-terminal domain-like 505 670 IPR015955 GO:0003824|GO:0016616
Aev03g2103 672 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 361 504 IPR036291 -
Aev03g2103 672 Pfam lactate/malate dehydrogenase, NAD binding domain 362 504 IPR001236 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev03g2103 Aev-Chr3 23589517 23594786 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev03g2103 1 313 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 38.973 3.38e-49 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Aev03g2103 Ldh_1_C 2.4e-50 CL0341
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev03g2103 K00026 - gmx:100170735 660.218
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev03g2103 03 23589517 23594786 Aev04g0729 04 4486462 4489186 PCT