Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev03g1851 ATGTCATCAACATCAAGTGAACCAATACACTATTGGTGTTACGCATGCAATGAACCAATCATGCTTATTGAACTGGGAGATGCCTTTTGCCCATATTGTTATGAAGGCTTCGTACAAGAACTCCACAATCAAATTCCTTCTCCTCCTCCTCCTTCTCGACATCATATGCGTGTTAATTCCGGTGACTATTTTATGGGCTCGGGGTTGGAAGAGCTTATTGAACAACTAAGCATGGATGATCAAAACATTACTAGTGGTGGTCCTACCTCGGCACCATCTTCTTCGATTAATGCGATGCCTACTATTAAGATCACTCGTTCTCACCTTCGCTCTGATTCCAAATGTCCAATTTGTCAAGAAGATTTTGTACTTGGGTCTGAGGCCAAGGCTATGCAATGTAACCATATTTTCCACTCGGATTGCATTGCTCTTTGGTTAGCACAACATAACTCGTGCCCTATCTGTCGTGTCCAGCTCCCACCTCCTTGA 489 0.4335 MSSTSSEPIHYWCYACNEPIMLIELGDAFCPYCYEGFVQELHNQIPSPPPPSRHHMRVNSGDYFMGSGLEELIEQLSMDDQNITSGGPTSAPSSSINAMPTIKITRSHLRSDSKCPICQEDFVLGSEAKAMQCNHIFHSDCIALWLAQHNSCPICRVQLPPP* 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev03g1851 162 ProSiteProfiles Zinc finger RING-type profile. 115 156 IPR001841 -
Aev03g1851 162 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 42 161 - -
Aev03g1851 162 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 78 162 IPR013083 -
Aev03g1851 162 SUPERFAMILY RING/U-box 95 161 - -
Aev03g1851 162 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHC1A-RELATED 10 43 - -
Aev03g1851 162 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 10 43 - -
Aev03g1851 162 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHC1A-RELATED 42 161 - -
Aev03g1851 162 Pfam Ring finger domain 114 156 IPR001841 -
Aev03g1851 162 SMART ring_2 115 155 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev03g1851 Aev-Chr3 20897014 20897502 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev03g1851 23 160 C3H Transcription Factor Family AT2G44330 38.194 1.68e-19 79.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev03g1851 K11982 - gmx:100813674 159.073