Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev03g1823 ATGGGTAGGAAAAAAAGTAAACCACATAGATCAGGTGGGATAATCCTAGATGCAAATGCTACTGCTGAAGCAGAATTGGATGAACAGAATGTTGTAGGAGGAGGAGGTGAAGAAAAAAAGGGTGATTCTGGGGAAGTTGATATACCCTATTTCGTTGAAGTTGACCGGTCCGGTTGGCATTCAAGCGAGCACCTTGATATTTCTGAAGTTGTTCTGAGGGATTTGAATTTAGGAGAAGGTGGTTCTGGTTTTGAACTGTCTGATGATTTTTATCAGGATCCCCAGTACTCGTTAAGATTTCGGGTGTGTAATGTCAGTAATGTTCTTGGTCGAATCAAATTAGGCCACTGGCCTGTGTTACCCTATACCGATATTCATTTAGAGTTTGTGAAAAGAGTTGCAGTGGACAATGTGGAAACATGTACAATGTTGTTGTCTGGGAATTTTGATGGACCTGATGAAGGTGTTTCGGGTCTTGTTCACTTGGCAAGTTTGAAGTTTTTTACACTGAGGCCAGTTCTTGGGACTAGGCTTTCGGAAGACATTCATTCCCTTTGGGTGAGGGTTGAGATACTAAAGAGTTCCTTCGATGCATGCGAGTCACTTCTTGATGTTTCTAGGCAACTATGGAAAAGGAGTATGATGAATGTCATGTCTTGGCTACGCCCAGAGATGATGACTTCAGAAGTTCGATATGGATTTAGTAATTGCGTAAAAATGGAAGTTGATACACAGACAGAGATGGGAGATGAGACATCCTACACCAGAAAATATTCAAGGTTTGATCCTGCTGGGTTTTATGAAGCCATTATGCCTTCAAAATCTGAGTCAATGCTAGAAGACGACATACCTGAGTTACTTCCAGAGCTGAGGCCATATCAGCGGCGTGCAGCTTTCTGGATGGTACAACGGGAGAAACAAATAGAAGCAAGTCAGGGTGAAAGAGAAAGAATTCAGTTCCACTCTCCACTATGTGTGCCTGTGGATTTTCTGGATACAAATTCTAAAATGTTTTTCAATCCATTCAGGCAAGGATTTTATTGTTTCTTCCCTTATGCTTATTTGAGTTACAATTGCTTCAGTGGAAATATTTCATTGTGCTCGGAGACTTCTTCACCTTATATATTTGGAGGAATTCTTGCTGGCGTGCGAGAAACATCTTTCTCCAATACATCTCTAGCGGATATCGGTGAACTTGCCAGTGCTGACATTGTGATTACTACCTATGATGTGCTTAAAGAGGATTTGTCCCATGATTTTGATAGACATGAAGTTATCCCTACTCTTCTTACTAGGATATACAGGTGGAGAGTTTGCTTGGATGAGGCTCAAATGGTGGAAAGTAATGCTGCCGCTGCCACTGAAATGGCTCTAAGACTCCATTCAAAGCATCGGTGGTGCATTACAGGGACACCAATTCAGCGCAAGCTTGATGATTTATATGGGCTTCTAAGATTCCTTAAAGCTAGTCCTTACGATACACACAAGTGGTGGACTGAAGTTATTCGAGATCCTTATGAGAAGGGAGATATGGGAGCCATGGAATTTACACACAGAGTTTTCAAACAAATCATGTGGCGTTCTTCTAAAGAACATGTAGCAGATGAATTGGACCTTCCCTCGCAGGAGGAGTGCCTCTCATGGCTTACTCTCTCACCTGTAGAAGAACACTTTTACCAAAGGCAACATGAAACCTGTGTCAATGATGCCCATGAAGTTATTGAAAGTTTGAGAAATGATATTCTTAATAGAAGAGGCCCAGATTCCGCAACTTTGAATGGTTTATCAGATCCTTTAATCACTCACTCAGAGGCAGGGAAGCTACTCAATGCTCTACTGAAGCTTCGCCAGGCTTGTTGTCACCCGCAGGTTGGGAGTTCTGGGCTGCGATCCCTGCAGCAGTCACCTATGACCATGGAGGAAATTCTAATGGTTCTTATAAATAAGACTAAAGTAGAAGGTGAGGAAGCTCTCAGAAGGTTAGTTGTTGCTCTAAATGGTCTTGCAGCAATAGGTATAATACAGAAAGATTTTTCTCAAGCTGCTTTACTGTACAATGAAGCTATGACATTGGCTGAACAGCACTCTGAAGATTTCCGCTTGGATCCTTTGTTAAATATCCACATTCACCATAATCTTGCCGAAATAATCCCTCAGGCTGCAGACCTTGCTCTAAGATTGCCATCTAAAGGAAAGCATTTCTCTCAAGCTTCTGCAGTTAAGATACTGGAAAGCACTTCATTGACACGGTTGATCAGCCTCTTTTAA 2268 0.4193 MGRKKSKPHRSGGIILDANATAEAELDEQNVVGGGGEEKKGDSGEVDIPYFVEVDRSGWHSSEHLDISEVVLRDLNLGEGGSGFELSDDFYQDPQYSLRFRVCNVSNVLGRIKLGHWPVLPYTDIHLEFVKRVAVDNVETCTMLLSGNFDGPDEGVSGLVHLASLKFFTLRPVLGTRLSEDIHSLWVRVEILKSSFDACESLLDVSRQLWKRSMMNVMSWLRPEMMTSEVRYGFSNCVKMEVDTQTEMGDETSYTRKYSRFDPAGFYEAIMPSKSESMLEDDIPELLPELRPYQRRAAFWMVQREKQIEASQGERERIQFHSPLCVPVDFLDTNSKMFFNPFRQGFYCFFPYAYLSYNCFSGNISLCSETSSPYIFGGILAGVRETSFSNTSLADIGELASADIVITTYDVLKEDLSHDFDRHEVIPTLLTRIYRWRVCLDEAQMVESNAAAATEMALRLHSKHRWCITGTPIQRKLDDLYGLLRFLKASPYDTHKWWTEVIRDPYEKGDMGAMEFTHRVFKQIMWRSSKEHVADELDLPSQEECLSWLTLSPVEEHFYQRQHETCVNDAHEVIESLRNDILNRRGPDSATLNGLSDPLITHSEAGKLLNALLKLRQACCHPQVGSSGLRSLQQSPMTMEEILMVLINKTKVEGEEALRRLVVALNGLAAIGIIQKDFSQAALLYNEAMTLAEQHSEDFRLDPLLNIHIHHNLAEIIPQAADLALRLPSKGKHFSQASAVKILESTSLTRLISLF* 756
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev03g1823 755 Pfam SNF2-related domain 399 624 IPR000330 GO:0005524|GO:0140658
Aev03g1823 755 Gene3D - 379 549 IPR038718 -
Aev03g1823 755 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SHPRH FAMILY MEMBER 1 381 - -
Aev03g1823 755 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SHPRH FAMILY MEMBER 382 724 - -
Aev03g1823 755 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 397 540 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev03g1823 Aev-Chr3 20473611 20479076 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev03g1823 395 622 RAD5 or RAD16-like Gene Family AT5G22750 33.333 1.76e-27 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Aev03g1823 SNF2_N 4.4e-56 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev03g1823 K15710 - gmx:100776659 620.928