LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aev03g1787	ATGACGGAGGTTGCAAGCTCAGTGGTCCACGAGGTCTTGGGACCTAGGGTTCTTGACGTGGATCAGCCAATCGTCGATTACATCATCAATGTCCTCGCCGACGACGACTTCGATTTCGGCCTCGACGGCGAAGGCGCCTTCGATGCTCTCGGAGAGCTACTCGTCGCTGCTTCCTGCGTCGACGATTTCTCCGAGTGTCGCTCCGTATGTAGCAAGCTTTCTGAGAAGTTCGGGAAGCATGGTTTGGTGAAGGCGAAGCCAACGGTTCGAAGCCTTGCGGCGCCGTTTAGGATGAATGAGGGAATGGATGAGGGAGCTGCCCCCAAGAAGAAGCCTGAGCCTGTTGATGGCCCTTTGCTCTCCGAACGCGACCGCATAAAGCTGGAAAGGAGAAAGAGGAAGGAAGAACGCCAGAGAGAGGCACAATACCAAATGCATTTGGCAGAGATGGAAGCGGCGCGGGCAGGGATGCCTGTTGTATGTGTTAGGCATGATGGTAGTGGTGGATCGGCTGTTAAGGATATTCATATGGAGAGCTTCAATATTTCTGTTGGTGGTCGCGACCTGATTGTGGATGGCTCTGTTACACTTTCATTTGGAAGGCATTATGGCCTTGTTGGAAGAAATGGTACAGGAAAAACTACTTTCCTCAGGCACATGGCTATGCATGCCATTGATGGTATTCCGAGGAATTGTCAGATATTGCATGTAGAACAAGAGGTTGTTGGTGATGATACGACTGCCTTGCAGTGTGTTCTTAATTCTGACATTGAAAGATGTCAGCTTATGGAGGAAGAAGCTCAGTTACTTGCCCAACAGAGGGATCTTGAGGACAAAATTGGAAAGAGCAATGATAATTTGAATGGAGTGGTTGATAGAGATGGTATTTCGAAAAGGCTTGAGGAAATATACAAGAGGCTTGAGTTGATTGATGCTTATTCTGCAGAGGCGCGTGCAGCATCCATACTTGCGGGTCTAAGTTTCACTCCTGAGATGCAGAAGAAAGCAACCAAAACATTTTCTGGAGGATGGCGGATGCGAATAGCTCTTGCTCGTGCACTGTTTATAGAACCTGATATGCTACTTCTTGATGAGCCTACGAATCATCTTGATCTTCATGCTGTCTTATGGCTTGAGTCGTACTTGGTTAAATGGCCAAAAACATTTATCGTGGTTTCTCATGCCAGAGAGTTCTTAAATACGGTGGTTACTGATATAATTCACTTACAAGGACAGAAGCTGACTACTTATAAAGGGAATTATGATACTTTTGAGAAAACAAGAGAAGAACAAATTAAAAACCAGCAAAAGGCAGTAGAGGCTAATGAACGTGCAAGATCTCATATGCAGTCCTTCATTGACAAGTTCCGCTATAATGCCAAGAGGGCATCACTTGTTCAATCGAGAATCAAGGCTTTGGACCGAATGGGCCATGTGGATGCGATTGTTAACGATCCTGACTACAAGTTTGAGTTCCCCACTCCAGATGATAGACCTGGCCCACCCATAATAAGTTTCAGTGATGCATCGTTTGGTTATCCTGGGGGACCCATTCTATTTAAGAATTTGAATTTTGGGATTGATCTTGACAGCCGTATTGCAATGGTTGGACCAAACGGAATTGGCAAATCAACTATACTTAAATTAATTGCTGGGGAACTAAATCCTAGTTCTGGAACAGTTTTCCGATCTGCTAAGGTTCGTATAGCAGTGTTTAGTCAGCATCATGTTGATGGACTTGACTTATCTTCAAATCCTCTTCTGTATATGATGCGCTGCTATCCTGGAGTTCCAGAGCAGAAGCTTCGAGCTCACTTAGGTTCTTTTGGTGTAACGGGAAATCTTGCGCTTCAACCTATGTATACTTTGTCAGGTGGTCAGAAAAGCAGAGTTGCCTTTGCTAAGATAACTTTCAAGAAGCCACATATAATGTTGCTTGATGAGCCATCCAATCATCTGGATTTGGATGCTGTTGAGGCTCTAATTCAAGGTCTTGTGCTGTTCCAAGGAGGCATTCTCATGGTGAGTCACGATGAACATCTCATATCTGGAAGCGTGGACGAGTTGTGGGTCGTGTCCGAAGGAAGAGTGACGCCATTCCATGGCGACTTCCATGATTACAAGAAGATACTCCAGTCTTAG	2142	0.4552	MTEVASSVVHEVLGPRVLDVDQPIVDYIINVLADDDFDFGLDGEGAFDALGELLVAASCVDDFSECRSVCSKLSEKFGKHGLVKAKPTVRSLAAPFRMNEGMDEGAAPKKKPEPVDGPLLSERDRIKLERRKRKEERQREAQYQMHLAEMEAARAGMPVVCVRHDGSGGSAVKDIHMESFNISVGGRDLIVDGSVTLSFGRHYGLVGRNGTGKTTFLRHMAMHAIDGIPRNCQILHVEQEVVGDDTTALQCVLNSDIERCQLMEEEAQLLAQQRDLEDKIGKSNDNLNGVVDRDGISKRLEEIYKRLELIDAYSAEARAASILAGLSFTPEMQKKATKTFSGGWRMRIALARALFIEPDMLLLDEPTNHLDLHAVLWLESYLVKWPKTFIVVSHAREFLNTVVTDIIHLQGQKLTTYKGNYDTFEKTREEQIKNQQKAVEANERARSHMQSFIDKFRYNAKRASLVQSRIKALDRMGHVDAIVNDPDYKFEFPTPDDRPGPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELNPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCYPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIMLLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVDELWVVSEGRVTPFHGDFHDYKKILQS*	714

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aev03g1787	713	MobiDBLite	consensus disorder prediction	101	120	-	-
	Aev03g1787	713	ProSiteProfiles	ATP-binding cassette, ABC transporter-type domain profile.	504	713	IPR003439	GO:0005524
	Aev03g1787	713	PANTHER	ATP-BINDING TRANSPORT PROTEIN-RELATED	121	712	-	-
	Aev03g1787	713	PANTHER	NON-TRANSPORTER ABC PROTEIN	121	712	-	-
	Aev03g1787	713	CDD	ABCF_EF-3	504	696	-	-
	Aev03g1787	713	Pfam	ABC transporter	521	651	IPR003439	GO:0005524
	Aev03g1787	713	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	175	440	IPR027417	-
	Aev03g1787	713	SMART	AAA_5	199	414	IPR003593	-
	Aev03g1787	713	SMART	AAA_5	529	696	IPR003593	-
	Aev03g1787	713	Pfam	ABC transporter	194	368	IPR003439	GO:0005524
	Aev03g1787	713	Gene3D	-	467	713	IPR027417	-
	Aev03g1787	713	Gene3D	-	126	449	IPR027417	-
	Aev03g1787	713	ProSiteProfiles	ATP-binding cassette, ABC transporter-type domain profile.	175	436	IPR003439	GO:0005524
	Aev03g1787	713	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	485	700	IPR027417	-
	Aev03g1787	713	ProSitePatterns	ABC transporters family signature.	623	637	IPR017871	GO:0005524
	Aev03g1787	713	CDD	ABCF_EF-3	175	413	-	-
	Aev03g1787	713	MobiDBLite	consensus disorder prediction	103	120	-	-
	Aev03g1787	713	Pfam	ABC transporter	407	488	IPR032781	-
	Aev03g1787	713	ProSitePatterns	ABC transporters family signature.	340	354	IPR017871	GO:0005524

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aev03g1787	Aev-Chr3	19974243	19980689	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aev03g1787	466	665	Calmodulin-binding Proteins	AT2G36910	27.155	3.56e-11	65.1

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aev03g1787	K06158		-	gmx:100790412	1268.45