LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aev03g1694	ATGGCTAAGTTTGCAGGAAAGGATGCCTTCCACTTGAGGGTCAGGGTACATCCATTCCATGTGCTTAGGATCAACAAAATGCTTTCATGTGCTGGAGCTGATAGGCTCCAAACTGGTATGAGAGGTGCCTTTGGGAAGCCACAGGGTACATGTGCTCGAGTGGCCATCAGCCAGGTCCTTCTTTCAGTTCGCTGCAAGGACAGCAACAGCCATCATGTACAGGAGGCTATCTGTCGTGTGTTCTGGTTCAATTCTCTGGTCATCATCTTCATCCAGGTTTTGGTAACTTCTAATCTTTGA	300	0.48	MAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAISQVLLSVRCKDSNSHHVQEAICRVFWFNSLVIIFIQVLVTSNL*	100

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aev03g1694	99	PANTHER	60S RIBOSOMAL PROTEIN L10	1	80	IPR001197	GO:0003735\|GO:0005840\|GO:0006412
	Aev03g1694	99	Gene3D	Ribosomal protein L10e/L16	1	83	IPR036920	GO:0003735\|GO:0005840\|GO:0006412
	Aev03g1694	99	CDD	Ribosomal_L16_L10e	1	80	IPR016180	GO:0003735\|GO:0005840\|GO:0006412
	Aev03g1694	99	Pfam	Ribosomal protein L16p/L10e	4	79	IPR016180	GO:0003735\|GO:0005840\|GO:0006412
	Aev03g1694	99	ProSitePatterns	Ribosomal protein L10e signature.	33	54	IPR018255	GO:0003735\|GO:0005840\|GO:0006412
	Aev03g1694	99	SUPERFAMILY	Ribosomal protein L16p/L10e	1	79	IPR036920	GO:0003735\|GO:0005840\|GO:0006412
	Aev03g1694	99	PANTHER	60S RIBOSOMAL PROTEIN L10-LIKE	1	80	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aev03g1694	Aev-Chr3	18898178	18898477	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aev03g1694	1	80	Cytoplasmic Ribosomal Protein Gene Family	AT1G26910	83.750	2.49e-44	140

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aev03g1694	K02866		-	egr:104420969	155.992