Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev03g1540 ATGTTGTCCGAATTTGCAATGGTTAAAGCTCTTAATGCTTCCAATAGTAAGCATTCAAAGATTAAGGTCAGAATAATCTGTCTTTGGAGGGTTCCATCGTATAATGACAAGGGAAGGAATCCTTCAATGGAGATTGTAGTGTTGGATGAGGAGGGTTCTAGGATTGGTTGTTCGATCCGTAGTTATAATCTAATGTTGTTCAATGATATACTAAAGGAAGGACAGGCATACGTTTTTTCAAACTTTGATATTCTTCCTAATGATGTCCGCTACAAGCCAACTCGACATGACTATAGGATTGTCTTCAAAAGAGACACTCAAGGACGCAGGATTGAGGACGACTCTATCCCGGCAGTTGGTTTTGATTTTGTAACCAATTCTGTCCTAGGAGAGAGAGGATGCATATTTACTTGGTCAGTAATCTTACCTCTCATTGTAAATGTTATAGGATTGTTGACTGCCAAAGGTAATTTGCAAAGTCTTTCTAAGGATGGAAAGTCTTTAAAACTAATGAAGCTTGAACTTGATGACCTTGAGAGTAATAATAAGATAAGTTGTACATTGTGGGATGATTTTGCTGAACAATTTGCCAAATTTCTACAAGACAACCCAGCTACTGAATACATAGTCATTCTTCAATTTGCAAAAATGAAGAAATTCAAAGGGGTAATGGGTATATCTAATGCAACATATACAACCAAACTTTTTATAAACGAAGACTTCATTGAGGTCAAGAAATTCAGGCTGAGGTTATGTTTGATGGATTCCAATTTATATACGGAGGTATCTCAAATTGAACAGGAGCCTTCCTATTCAGTAGTAGAGGAATTTCTGAATGTTCATCCTTACAGGACTGTTGCAGAATTGAAAGAATACAACCAGATGGACAAGAATATATATGTTACATTTGGCACAATCAAGGAAATTGAGAATGAGTTCAGTTGGTGGTATAATGCCTGTAAAATTTGTTTTCAAAGTTTGAAGGAACACGTTAAAAGTTTTCACTGTAGAAAATGTGATGCATACCCCAATGCTTATGTGCCTAGGTACAGTCTTAGACTAAGGGTTGAGGATGAAACAGATTCAGCTGCACTACTACTATATGATAGGGAAGCTTCTAACTTGCTTAACATATCTGCACATGACCTTCGCGCACTACAGATGACTAGGGGTGCGGGTATGAATGACTATCCTGCTAAGATTAATGAATTGGTAGACAAGAGATTTTTATTCAAGGTTTCTGTCAAGACGGAGGATATTAATTCTTTCCAGCCATGCGTCATTACAATTGTGAAACTTTCCTCTGATCCTGGATTAATTTCTGCATTTAAGGCTAAATATCAAATCAATGAGCTTCAATTCATACCGGATACATCTGATATAAGTGCTAGCTTTGCTGATATACCACCATTGAACAAGGATAGTTCGTCCCAGACATGTGACTTGGGAAAGGACAGTGAGGAAACACCTTTGGGTACTCCTTCAAAGGATTATATTGATGATGAGTGCAGTGTGAAATGCACAGAGGAATGTTCTAACCAGGCAAGCGTGTCTTCCAAGAAGTTGTGGAGTTTTATTACTCCAGATGATTAA 1593 0.3754 MLSEFAMVKALNASNSKHSKIKVRIICLWRVPSYNDKGRNPSMEIVVLDEEGSRIGCSIRSYNLMLFNDILKEGQAYVFSNFDILPNDVRYKPTRHDYRIVFKRDTQGRRIEDDSIPAVGFDFVTNSVLGERGCIFTWSVILPLIVNVIGLLTAKGNLQSLSKDGKSLKLMKLELDDLESNNKISCTLWDDFAEQFAKFLQDNPATEYIVILQFAKMKKFKGVMGISNATYTTKLFINEDFIEVKKFRLRLCLMDSNLYTEVSQIEQEPSYSVVEEFLNVHPYRTVAELKEYNQMDKNIYVTFGTIKEIENEFSWWYNACKICFQSLKEHVKSFHCRKCDAYPNAYVPRYSLRLRVEDETDSAALLLYDREASNLLNISAHDLRALQMTRGAGMNDYPAKINELVDKRFLFKVSVKTEDINSFQPCVITIVKLSSDPGLISAFKAKYQINELQFIPDTSDISASFADIPPLNKDSSSQTCDLGKDSEETPLGTPSKDYIDDECSVKCTEECSNQASVSSKKLWSFITPDD* 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev03g1540 530 Gene3D - 6 114 IPR012340 -
Aev03g1540 530 SUPERFAMILY Nucleic acid-binding proteins 8 110 IPR012340 -
Aev03g1540 530 MobiDBLite consensus disorder prediction 473 496 - -
Aev03g1540 530 CDD RPA1_DBD_C 286 421 IPR013955 -
Aev03g1540 530 CDD RPA1_DBD_A_like 20 106 - -
Aev03g1540 530 SUPERFAMILY Nucleic acid-binding proteins 143 248 IPR012340 -
Aev03g1540 530 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 23 383 - -
Aev03g1540 530 Pfam Domain of unknown function DUF223 44 107 IPR003871 -
Aev03g1540 530 PANTHER REPLICATION FACTOR A 1, RFA1 23 383 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Aev03g1540 530 SUPERFAMILY Nucleic acid-binding proteins 282 432 IPR012340 -
Aev03g1540 530 Pfam Replication factor-A C terminal domain 303 432 IPR013955 -
Aev03g1540 530 Gene3D - 277 437 IPR012340 -
Aev03g1540 530 Gene3D - 115 255 IPR012340 -
Aev03g1540 530 CDD RPA1_DBD_B_like 147 251 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev03g1540 Aev-Chr3 16859454 16862009 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev03g1540 21 434 Core DNA Replication Machinery Family AT5G08020 23.059 9.49e-19 87.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev03g1540 - - adu:107490971 408.297