Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev03g1261 ATGATGGATGTTGTTGAGGTTGAAGAAAATCTGTTTGCAGCAAGTGATGCCAAGTTACATGGAGGAATGTGCAAGAGTCTTTCTGCAATATATTATAAAATACTGTTAATATTTCCTTCTTTAGAAGATTCGAGGCCTAGGAGCAAATCTGGAATTCAGGCATTATGTTCACTGCATGTAGCTTTAGAGAAGGCGAAGAATGTTCTTCGGCACTGCTCAGAATGTAGTAAACTTTACTTGGCTATAACTGGGGATTCGGTTCTTCTAAAATTTGAGAAGGCTAAATCTTTGCTCATAGACAGTCTCAAATTAGTGGAAGACATTGTTCCACAGTCCATTGGGTGTCAGGTTGAGGAAATTGTGAATGAACTTTCAAGTACGGTATTTGCACTTGAACCATCAGAGAAAGAAGTTGGGGATGATTTAATTACATTACTTCAGCAGGAGAGGAAGTTTGACAACTCTAACGACAGTGGTGAACTTGAATGTTTTCATCAGGCTGCTACTAGACTTGGTATCACATCTTCAAGAGCAGCTCTTACTGAAAGACGAGCTCTCAAAAAACTCATTGAAAGGGCACGGGTCGAGGATGACAAACGGAAAGAATCAATTATTGCATTTCTTTTCCACCTTATGAGGAAATACTCTAAGTTGTTTAGAAGTGAGTTTTCCGATGATAACGATTCTCAGGGTTCTCAACCTTGTTCTCCGACTGTTCAGAGATCTATTGAGGATGGCGTTCATGGTGGTCATTCTCAGGCCTTTGATAGACAGCTTTCAAAACTTAGTTCCTTTAATTTTAAGTCAAATAATAGGAAATCAGGACAGATGCTCCTTCCTCCTGAAGAGTTAAGGTGTCCAATATCTCTGCAACTCATGAGTGATCCTGTTATAATTGCTTCTGGTCAAACATATGAAAGGGTTTGCATAGAAAAATGGTTCAAGGATGGGCACAACACCTGCCCAAAGACTCAGCAGAAACTTCAACATCTTTTTTTGACTCCTAATTACTGTGTTAAGGGTCTCGTGGCTAATTGGTGTGAACTGAACGGAATTCCTATTCCTGATCGCCCACCTGAATCTCTTGATTTTAACTACTGGAGATTGGCATTATCAGATTCTGATTCCACAAATTCAAGATCAGTAAACAGCGTTAACTCTTGCAAGATGAAGGGTGTTAAAGTGGTTCCTTTAGAAGAGAGTGGCATCTCAGAGCTAACAGGGGGAACTGGAGCCGAAAGTGTGTCTGCACAGGAGCTAGATACTGAGCAGTGTTTAAGTTTTTTGAAAGTCTTGACCGAAGGGAATGATTGGAAGAAAAAGTGTAAAGTGGTGGAACAGTTAAGGCTGTTGCTGAGGGATGATGAGGAAGCTAGGATATTTATGGGGGCTAATGGATTTGTTGAGGCACTTCTGCAGTTTCTTCAATCAGCTATGCGTGAAGGGATAGTGGTGGATCAAGAAAATGGAGCTATGGCGTTGTTCAACCTGGCTGTGAATAATGACAGAAATAAGGAAACCATGATATCAGCAGGAATCATATCGTTGTTGGAGGAAATGACCTCTAACCCTAATTGTTATGGCTGTGCGACTGCTCTCTATCTAAATCTCTCTTGCCTTGAAGAAGCCAAGCCAATGATTGGCAAGATGAGTCAGGCTGTCCGGTTCCTAATCCAGGTTCTTCGATCCAACACCGATGTCCAATGCAAGCTCGATTCTCTCCATACACTCTATAATCTTTCTACCATGTCATCCAACATTCCAAACCTCCTTTCATGTGGAATCATGAATTGCCTGCAATGTCTTATTGTAAGCCAGGGTGATTACATGTGGGCAGAGAAATGCATAGCTGTGATGATAAATCTGGCTGTTTCTGAATTGGGAAGAGAGGAAATGATGTCATCACCCGCACTCATAAGCACATTGGCTTCAATACTGGAGACCGGTGAGGTCGTAGAGCAGGAACAAGCCGTCTCTTGTCTCCTAATTTTGTGTAACAGGAGCGAGAAATGTAGTGAGATGGTCCTGCAAGAAGGGGTTATACCCTCGTTGGTGTCAATATCGGTGAATGGGACATCAAGAGGTAGAGAAAAATCACAGAAACTCTTGTTGCTCTTCCGAGAGCAGCGACAACGAGACCGTTCCCCTGCTAAAACAGATCAATCCCAACCAGAAACCAGCGATGATTCGCCCATGGCTGCTCCCGAGGTGAAACCCCTATGCAAGTCAATATCTAGAAGAAAAGTTGGGAAAGCTTTCGGGTTTCTATGGAAAAGCAAGAGCTATTCTGTTTACCAGTGTTAA 2304 0.4214 MMDVVEVEENLFAASDAKLHGGMCKSLSAIYYKILLIFPSLEDSRPRSKSGIQALCSLHVALEKAKNVLRHCSECSKLYLAITGDSVLLKFEKAKSLLIDSLKLVEDIVPQSIGCQVEEIVNELSSTVFALEPSEKEVGDDLITLLQQERKFDNSNDSGELECFHQAATRLGITSSRAALTERRALKKLIERARVEDDKRKESIIAFLFHLMRKYSKLFRSEFSDDNDSQGSQPCSPTVQRSIEDGVHGGHSQAFDRQLSKLSSFNFKSNNRKSGQMLLPPEELRCPISLQLMSDPVIIASGQTYERVCIEKWFKDGHNTCPKTQQKLQHLFLTPNYCVKGLVANWCELNGIPIPDRPPESLDFNYWRLALSDSDSTNSRSVNSVNSCKMKGVKVVPLEESGISELTGGTGAESVSAQELDTEQCLSFLKVLTEGNDWKKKCKVVEQLRLLLRDDEEARIFMGANGFVEALLQFLQSAMREGIVVDQENGAMALFNLAVNNDRNKETMISAGIISLLEEMTSNPNCYGCATALYLNLSCLEEAKPMIGKMSQAVRFLIQVLRSNTDVQCKLDSLHTLYNLSTMSSNIPNLLSCGIMNCLQCLIVSQGDYMWAEKCIAVMINLAVSELGREEMMSSPALISTLASILETGEVVEQEQAVSCLLILCNRSEKCSEMVLQEGVIPSLVSISVNGTSRGREKSQKLLLLFREQRQRDRSPAKTDQSQPETSDDSPMAAPEVKPLCKSISRRKVGKAFGFLWKSKSYSVYQC* 768
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev03g1261 767 ProSiteProfiles U-box domain profile. 279 353 IPR003613 GO:0004842|GO:0016567
Aev03g1261 767 SUPERFAMILY ARM repeat 429 697 IPR016024 -
Aev03g1261 767 PANTHER U BOX DOMAIN-CONTAINING 2 752 - -
Aev03g1261 767 Gene3D - 411 716 IPR011989 -
Aev03g1261 767 Pfam U-box domain 281 349 IPR003613 GO:0004842|GO:0016567
Aev03g1261 767 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 280 352 IPR013083 -
Aev03g1261 767 SMART Ubox_2 283 346 IPR003613 GO:0004842|GO:0016567
Aev03g1261 767 MobiDBLite consensus disorder prediction 225 240 - -
Aev03g1261 767 CDD RING-Ubox_PUB 284 326 IPR045210 -
Aev03g1261 767 MobiDBLite consensus disorder prediction 710 739 - -
Aev03g1261 767 MobiDBLite consensus disorder prediction 223 251 - -
Aev03g1261 767 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 2 752 - -
Aev03g1261 767 SUPERFAMILY RING/U-box 274 357 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev03g1261 Aev-Chr3 11986396 11990298 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev03g1261 2 766 U-box Gene Family AT1G24330 65.769 0.0 1012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev03g1261 - - gmx:100804344 1198.34