Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev03g1054 ATGGCCGCCGCCGCAGCCGCAGCCGCAGCACCTCCGAGACAGCTGTCGCAGAAGGAGCAGGACATACAGATGATGCTCGCTGCTGAGGTTCACCTGGGAACCAAAAACTGCGACTTCCAGATGGAGCGCTACGTCTTCAAGCGCCGTAATGACGGTATTTACATCATTAACCTTGGCAAGACATGGGAGAAGCTTCATCTTGCAGCAAGGATTATCGTTGCCATTGAGAATCCTCAGGATATTATTGTTCAGTCTGCCAGGCCTTATGGTCAAAGAGCTGTACTCAAGTTTGCTCAATACACTGGCACTAATGCCATTGCTGGAAGGCACACTCCTGGAACATTCACCAACCAGATGCAGACATCCTATAACGAGCCTCGTCTTCTCATCCTGACTGATCCCAGAACAGATCATCAGCCCATTAAAGAAGGTGCTCTCGGAAATATTCCAACTATTGCTTTTTGCGACACTGATTCTCCAATGCGCTATGTTGATGTTGGTATTCCTGCCAATAACAAGGGGAAACACAGCATTGGTTGTCTCTTTTGGCTATTAGCAAGGATGGTACTGCAGATGCGGCGTGCCATTCTTCCAGGGCATAAGTGGGATGTCATGGTTGATTTATTCTTCTATAGAGAACCTGAGGAGACCAAGCAACTAGAGGAGGAGGAAGCACCAGCTGCCCCAGATTTTCCCATTGACTTTAATGCTCCTCCCGTTGCTAGCTTCGCTGCTGATGGCGAATGGTCTGCTGCAGTTGACCAACCTTGGCCTGAGGCAGCTGCACAACCTATCCCAGCAGCTCCGGCTAACTGGACTGCAGAAGCTGGTGATTGGGGTGAGACTGTCCCAGCTCCACAAGTTTCTGTGCCTGCACCCGGAAATGTTGCTGCAACAGGCTGGGAATCTTGA 912 0.5044 MAAAAAAAAAPPRQLSQKEQDIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLHLAARIIVAIENPQDIIVQSARPYGQRAVLKFAQYTGTNAIAGRHTPGTFTNQMQTSYNEPRLLILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMRYVDVGIPANNKGKHSIGCLFWLLARMVLQMRRAILPGHKWDVMVDLFFYREPEETKQLEEEEAPAAPDFPIDFNAPPVASFAADGEWSAAVDQPWPEAAAQPIPAAPANWTAEAGDWGETVPAPQVSVPAPGNVAATGWES* 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev03g1054 303 TIGRFAM uS2_euk_arch: ribosomal protein uS2 18 213 IPR005707 GO:0003735|GO:0006412|GO:0015935
Aev03g1054 303 PANTHER 40S RIBOSOMAL PROTEIN SA 14 294 IPR005707 GO:0003735|GO:0006412|GO:0015935
Aev03g1054 303 Hamap 40S ribosomal protein SA [rps-0]. 9 282 IPR027498 GO:0003735|GO:0006412|GO:0015935
Aev03g1054 303 MobiDBLite consensus disorder prediction 277 303 - -
Aev03g1054 303 PANTHER 40S RIBOSOMAL PROTEIN SA 14 294 - -
Aev03g1054 303 SUPERFAMILY Ribosomal protein S2 17 207 IPR023591 -
Aev03g1054 303 Gene3D - 21 227 - -
Aev03g1054 303 ProSitePatterns Ribosomal protein S2 signature 2. 126 150 IPR018130 GO:0003735|GO:0005840|GO:0006412
Aev03g1054 303 PRINTS Ribosomal protein S2 signature 101 118 IPR001865 GO:0003735|GO:0005840|GO:0006412
Aev03g1054 303 PRINTS Ribosomal protein S2 signature 52 61 IPR001865 GO:0003735|GO:0005840|GO:0006412
Aev03g1054 303 PRINTS Ribosomal protein S2 signature 164 178 IPR001865 GO:0003735|GO:0005840|GO:0006412
Aev03g1054 303 PRINTS Ribosomal protein S2 signature 126 143 IPR001865 GO:0003735|GO:0005840|GO:0006412
Aev03g1054 303 PRINTS Ribosomal protein S2 signature 22 40 IPR001865 GO:0003735|GO:0005840|GO:0006412
Aev03g1054 303 PRINTS Ribosomal protein S2 signature 143 154 IPR001865 GO:0003735|GO:0005840|GO:0006412
Aev03g1054 303 CDD RPS2 25 191 IPR001865 GO:0003735|GO:0005840|GO:0006412
Aev03g1054 303 ProSitePatterns Ribosomal protein S2 signature 1. 22 33 IPR018130 GO:0003735|GO:0005840|GO:0006412
Aev03g1054 303 Pfam Ribosomal protein S2 25 120 IPR001865 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev03g1054 Aev-Chr3 8985757 8988143 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev03g1054 4 294 Cytoplasmic Ribosomal Protein Gene Family AT3G04770 71.134 5.47e-150 420
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev03g1054 K02998 - gmx:100786575 467.618