Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev03g1004 ATGATATTAGAACTCTTCATCCTCATTAGGAAGCTGAAATCATCAGCAACAAGACCAATCACAACAAAGCAATACCTCAAATTCATCGAAGAGAAGAACCCAACAATTTCTTACACCAAAGGGTTGAAGGCGCGACACGTGGATTGCACGGTGTGCTTGTCGGAGTTCAAAGAAGGTGAGAAGTTGAGAAGCTTGAGATGCCAACATACTTTCCATAGGGATTGTTTGGACAAATGGTTGCAAGAGTATTTAGCCACATGTCCATTGTGTAGGATCAAAGTGTTGCCAGATGATGTTGTTTCGAAGCACCGGAATCAGGTTGGTTCAGGTGATGAGAATTCTGGTGACCGCCTTCAATTTTGGTTGGCTGCATTACGTGGTGGTAATGCTTTGAATGGATAA 402 0.4279 MILELFILIRKLKSSATRPITTKQYLKFIEEKNPTISYTKGLKARHVDCTVCLSEFKEGEKLRSLRCQHTFHRDCLDKWLQEYLATCPLCRIKVLPDDVVSKHRNQVGSGDENSGDRLQFWLAALRGGNALNG* 134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev03g1004 133 ProSiteProfiles Zinc finger RING-type profile. 49 91 IPR001841 -
Aev03g1004 133 SUPERFAMILY RING/U-box 28 97 - -
Aev03g1004 133 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 10 96 IPR013083 -
Aev03g1004 133 PANTHER - 2 129 - -
Aev03g1004 133 CDD RING-H2_PA-TM-RING 48 91 - -
Aev03g1004 133 SMART ring_2 49 90 IPR001841 -
Aev03g1004 133 Pfam Ring finger domain 48 91 IPR001841 -
Aev03g1004 133 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 2 129 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev03g1004 Aev-Chr3 8383242 8383643 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev03g1004 48 108 C3H Transcription Factor Family AT1G15100 54.098 3.70e-20 79.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev03g1004 K16282 - gmx:102669811 171.785
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev03g1004 03 8383242 8383643 Aev03g1004 03 8383242 8383643 PCT