LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aev03g0910	ATGGATGGTTCCACTTTGCTGCTAGATTCATTAGTTAACATATCCAATGAAGTTTCATCAATGGACAAATCTCCATTTATACATGCAAGAAATGTTTCATCAATGATAAGGAGGATCAAGCTTCTTTCTTCTTTGTTTGAAGAGATTCATGTAATAGATACTCCACTTCCTCCATCTTCAATCATGTGTTTCAATGAGCTCTTAGCTCTGATAACAAAAGTGAAGATTTTGATCCAAGAGTGCAAGGATGGAAGCTATCTTTGGAGCCTAATTCGGTTAGAGTTCATGTCAAACCAATTCTTTGTGTTGGCAAAGGATATAGGAAGTGCCATTGATATTCTTCCTCTGAGTTTTCTTAACATCACAAAAGATACACAGGAGCAGGTTGAGCTTCTTCACAAACAATTGAAGAAGGTCGAGTTGTTCGTCGATTCGCGAGATCTACAACGAAGAGATTGGCTTCTAGATGTAATGGATAACAATAGATTACAAAACAAGAAGAATAAGGGCTTTGATGATTTTGGAAAAGTGGAAGAAATATTAAGCAAAATTGGTTTGAGAACCTTATCAGATTATGATAGGGAAATATCCAAACTAGAGACTGAAGCACAGAATCAGGCAGGAACAGGTGGACTAATTGTGGTCTCGAATATCAACAATCTCTTATCTCTGGTTTCATATTCCAAATCCATGATATTCAGAGATGGAGAAAGTATAAAAAATGAAGGAGAGAGCAAGAAACTATCAGAATTTCTACATCTCAAAATTCATGATAGTTCACCATCTTCTCAGTCCATGGTGACACTTGATATACCGGACGAATTCCGTTGCCCGATTTCACTTGAACTAATGAGAGACCCTGTGATTGTATCATCTGGACACACTTATGATAGAATTTCCATTTCACAATGGATAAACTCTGGTCATCAAAGTTGCCCCAAAAGTGGGCAAAGGCTAATTCACACTGCTCTAATACCGAACTACGCGTTGAAGAGCCTTGTCCGGCATTGGTGCTATGAGAACAAGGTCGCAGTGAATGAGCCGAACTTACCTCTTTCGGAGGTAAACATCAGCAAATTGAACTTGAGTGTGAATGATGCTGATCCTGTTTCTGCAAACAAAGCATCTGCAGATGCTGTCAAAATGACAGCAGAATTTCTAGTTGGGAAATTGGCAACTGGCTCAGTTGACATACAAAGAAAAGCTGCATATAAACTTCGGTTGCTTGCGAAAGGTGGAACCGATAATCGAAAAATTATAGCCGAGGCAGGGGCTATTCCATTTCTAGTAACACTATTAGGTTCCAATGATCCAAGAATCCAGGAACATGCAGTGACAGCATTGTACAACCTCTCCATCTTTGATAACAACAAGATTTTGATAGTGGCTGCTGGAGCAGTCGAGAACATAGTAGAAGTGCTCGAATCAGGGAAGACCATGGAAGCTAGAGAAAATGCAGCTGCAGCAATCTTCAGCTTGTCTATGTCTGACGATAACAAAATAACAATTGGAACTCATCCAAGGGCCATAAGGGCATTAGTTAGACTCCTGAGAGAAGGCACTCCTATAGGGAAAAGAGACGCTGCGACTGCGCTTTTCAATCTCGCAGTTTACAATCATAACAAGGAAAGAATTGTTGATGCTGGAGCCGTTCCTTTGCTCATCGACTTGTTGATGGATGACAAGGCTGGTATAACAGATGATGCATTGGCTGTGCTTGCTTTGCTTCTTGGTTGCTCTCAAGGGTTGGAAGAGATAAGGAATAGCAGAGCATTGGTGCCTCTACTTATTGATCTTCTGAGATTCGGATCAAACAAAGGGAAGGAAAATTCAATAACACTTCTACTTGGATTGTGCAAAGAAGAAGGCGAGGTTGTGGCGATGCGCCTCTTGGCTAATCCGAGGAGCATTCCTTCACTTCAGAGCTTGGCTTCTCATGGTTCTTTGAGAGCTAGAAGAAAAGCTGATGCATTGCTTAGGTTGCTCAATAGGTGCTGCTCACAACCTTATCATTCTCTTTGA	2022	0.407	MDGSTLLLDSLVNISNEVSSMDKSPFIHARNVSSMIRRIKLLSSLFEEIHVIDTPLPPSSIMCFNELLALITKVKILIQECKDGSYLWSLIRLEFMSNQFFVLAKDIGSAIDILPLSFLNITKDTQEQVELLHKQLKKVELFVDSRDLQRRDWLLDVMDNNRLQNKKNKGFDDFGKVEEILSKIGLRTLSDYDREISKLETEAQNQAGTGGLIVVSNINNLLSLVSYSKSMIFRDGESIKNEGESKKLSEFLHLKIHDSSPSSQSMVTLDIPDEFRCPISLELMRDPVIVSSGHTYDRISISQWINSGHQSCPKSGQRLIHTALIPNYALKSLVRHWCYENKVAVNEPNLPLSEVNISKLNLSVNDADPVSANKASADAVKMTAEFLVGKLATGSVDIQRKAAYKLRLLAKGGTDNRKIIAEAGAIPFLVTLLGSNDPRIQEHAVTALYNLSIFDNNKILIVAAGAVENIVEVLESGKTMEARENAAAAIFSLSMSDDNKITIGTHPRAIRALVRLLREGTPIGKRDAATALFNLAVYNHNKERIVDAGAVPLLIDLLMDDKAGITDDALAVLALLLGCSQGLEEIRNSRALVPLLIDLLRFGSNKGKENSITLLLGLCKEEGEVVAMRLLANPRSIPSLQSLASHGSLRARRKADALLRLLNRCCSQPYHSL*	674

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Aev03g0910	673	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	270	346	IPR013083	-
Aev03g0910	673	ProSiteProfiles	U-box domain profile.	270	344	IPR003613	GO:0004842\|GO:0016567
Aev03g0910	673	SMART	Ubox_2	274	337	IPR003613	GO:0004842\|GO:0016567
Aev03g0910	673	ProSiteProfiles	Armadillo/plakoglobin ARM repeat profile.	508	550	IPR000225	GO:0005515
Aev03g0910	673	PANTHER	U BOX DOMAIN-CONTAINING	6	669	-	-
Aev03g0910	673	ProSiteProfiles	Armadillo/plakoglobin ARM repeat profile.	424	466	IPR000225	GO:0005515
Aev03g0910	673	Gene3D	-	504	664	IPR011989	-
Aev03g0910	673	SUPERFAMILY	RING/U-box	258	345	-	-
Aev03g0910	673	SUPERFAMILY	ARM repeat	385	662	IPR016024	-
Aev03g0910	673	CDD	RING-Ubox_PUB	275	317	IPR045210	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Aev03g0910	Aev-Chr3	7478163	7480184	Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aev03g0910	10	668	U-box Gene Family	AT3G46510	38.462	7.98e-126	386

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aev03g0910	-		-	gmx:100793498	954.896

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Aev03g0910	03	7478163	7480184	Aev03g0910	03	7478163	7480184	ECH

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