Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev03g0894 ATGGCTTCCACTTCGTCGTCGAGTTCACGCCCTGTCGAAGCCATCTTCAAGGACTACACCGCACGTAGAACTGCCCTCATTCGTGCCCTCACCATTGAGAAAGAGCACTTGTGTTTGTATGGGCACCCTAATGAGTCATGGGAGGTTACTCTGCCGCCAGAGGAAGTTCCTTCGGAGATTCCGGAGCCGGTGCTGGGGATCAATTTCGCTAGAGATGATTTGAGTCGTAGAGACTGGCTTTCGTTGGTTGCTGTGCACAGTGATTGCTGGTTGCTATCTGTGGCATTCTGTCTTGGAGGCAGGCTAAAAAGGAAAGAGAGGAAGCAGCTATTCACCCTAACGAACAATCTGCCAACTCTCTATGAAATTGTAACAGGACAAAAGCCTGCAAAGGATAAGCCCACTACAGATAATGGTAGCAAATCTCAGAGCGGCTCAAAGAGATCAAATGAAGGACATATCAAAAGCAATTCCAAGCAACTTAATGAAAGTAACGGGGAGGATGGGGAGGAGCGCGGCGATACCCTCTGTGGGAGCTGTGGCAGAAACTACAACTCGGATGAGTTTTGGATTTGTTGCGGCGTATGTGAGAGATGGTATCATGGGGAGTGTGTGAAGATCACTCGAGAAAACTTTTGGATTTGTTGCGACGTATGTGAGAGATGGTATCATGGGGAGTGTGTGAAGATCACTCCAGAAAACGCAGAAATTATTATGCAATATGAATGCTCTTCTTGTAACAACACTAAGAGGGCTAGGCAGAAGATGCCAATTTTAGACTAA 783 0.4713 MASTSSSSSRPVEAIFKDYTARRTALIRALTIEKEHLCLYGHPNESWEVTLPPEEVPSEIPEPVLGINFARDDLSRRDWLSLVAVHSDCWLLSVAFCLGGRLKRKERKQLFTLTNNLPTLYEIVTGQKPAKDKPTTDNGSKSQSGSKRSNEGHIKSNSKQLNESNGEDGEERGDTLCGSCGRNYNSDEFWICCGVCERWYHGECVKITRENFWICCDVCERWYHGECVKITPENAEIIMQYECSSCNNTKRARQKMPILD* 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev03g0894 260 Pfam PHD-finger 209 248 IPR019787 -
Aev03g0894 260 Pfam Alfin 12 125 IPR021998 GO:0006355|GO:0042393
Aev03g0894 260 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 166 210 IPR013083 -
Aev03g0894 260 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 211 254 IPR013083 -
Aev03g0894 260 SUPERFAMILY FYVE/PHD zinc finger 166 210 IPR011011 -
Aev03g0894 260 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 2 4 209 - -
Aev03g0894 260 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 2 209 253 - -
Aev03g0894 260 ProSiteProfiles Zinc finger PHD-type profile. 174 249 IPR019787 -
Aev03g0894 260 MobiDBLite consensus disorder prediction 125 170 - -
Aev03g0894 260 PANTHER CPG BINDING PROTEIN 4 209 IPR045104 GO:0006355|GO:0042393
Aev03g0894 260 PANTHER CPG BINDING PROTEIN 209 253 IPR045104 GO:0006355|GO:0042393
Aev03g0894 260 SUPERFAMILY FYVE/PHD zinc finger 210 253 IPR011011 -
Aev03g0894 260 SMART PHD_3 211 247 IPR001965 -
Aev03g0894 260 SMART PHD_3 176 210 IPR001965 -
Aev03g0894 260 MobiDBLite consensus disorder prediction 131 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev03g0894 Aev-Chr3 7313796 7316657 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev03g0894 3 254 Alfin-like Transcription Factor Family AT5G05610 56.439 1.29e-86 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Aev03g0894 Alfin 1.5e-46 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev03g0894 - - zju:107413853 319.316