Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev03g0891 ATGCTTCGGTCTATAAAAGACAGATATGAAACCCTAACCTCTGAAGCGGAGAAGAAAGAAGAGTCAGGTGGCGTCAGAGAGAGATGGAGCGGAGACGACGGCGACACGGAGGCCGGCGACGTCAATGAGGGAAGCAGCGCGAAGCCAGTCGCAGAGGGCAGGAAGAAGGTGAAACTTGCCTATATTCAACATGACTATGCTAGGAAAGCAACATTCAAGAAAAGGAAGAGAGGCATCTTGAAAAAGGTGAATGAACTCACAATTCTTTGTGGAATTCAAGCTTGTGCTATAATTTCGAACCCTTTTGACTCTAAGGAGGCCGAGATTTGGCCAAATCTTGAGGGAGCGAAGGAGGTAATTGAAAAGTATCAAAGCTCCAAGATAGATGAAAGCAAGAATTTGAATCAAAAGGGCTTCATGTTGCAAAGGATTGCAAAAGCCAAGGACCAACTAAAGAAACAACTTAAGGAGAACCATAAGAAACAAATGGTTCTATCTATGTTTGAGTACATGAAAAGAAAAGAGTTTTCAAATGACTTGACCATTGCAGATCTAAAAGATATCGACAAGGTGATTGATCAAAATATGAAGGAAATTGAAATCAAGATAGCTTCACTTGCTTGA 624 0.4167 MLRSIKDRYETLTSEAEKKEESGGVRERWSGDDGDTEAGDVNEGSSAKPVAEGRKKVKLAYIQHDYARKATFKKRKRGILKKVNELTILCGIQACAIISNPFDSKEAEIWPNLEGAKEVIEKYQSSKIDESKNLNQKGFMLQRIAKAKDQLKKQLKENHKKQMVLSMFEYMKRKEFSNDLTIADLKDIDKVIDQNMKEIEIKIASLA* 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev03g0891 207 MobiDBLite consensus disorder prediction 1 35 - -
Aev03g0891 207 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 61 101 IPR002100 GO:0003677|GO:0046983
Aev03g0891 207 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 54 205 - -
Aev03g0891 207 PRINTS MADS domain signature 54 74 IPR002100 GO:0003677|GO:0046983
Aev03g0891 207 PRINTS MADS domain signature 74 89 IPR002100 GO:0003677|GO:0046983
Aev03g0891 207 PANTHER MADS BOX PROTEIN 54 205 - -
Aev03g0891 207 CDD MADS_SRF_like 53 133 IPR033897 GO:0000981|GO:0000987|GO:0045944
Aev03g0891 207 ProSiteProfiles MADS-box domain profile. 52 98 IPR002100 GO:0003677|GO:0046983
Aev03g0891 207 MobiDBLite consensus disorder prediction 1 50 - -
Aev03g0891 207 SMART madsneu2 52 112 IPR002100 GO:0003677|GO:0046983
Aev03g0891 207 Gene3D - 65 175 IPR036879 GO:0003677|GO:0046983
Aev03g0891 207 SUPERFAMILY SRF-like 53 126 IPR036879 GO:0003677|GO:0046983
Aev03g0891 207 Coils Coil 2 22 - -
Aev03g0891 207 Coils Coil 141 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev03g0891 Aev-Chr3 7270226 7273643 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev03g0891 54 203 Type I MADS-box Gene Family AT5G48670 44.079 2.24e-31 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Aev03g0891 SRF-TF 8.7e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev03g0891 - - gmx:100792290 179.104