Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev03g0857 ATGGAAGAGGGCATGTCAGGTTTTTACATTAAAGGTAGAAGTAGTGTATGTGGGACAAAGTGTGGGCGTTGGAACCCAACAACAGAACAGGTTAAGGTTCTGACAGAGTTGTTCAGTTCTGGACTCAGAACACCAAGCACTGATCAGATTCAGAGGATTTCCAATGAGCTTAGTTTTTATGGTAAGATTGAGAGCAAGAATGTGTTCTATTGGTTTCAGAACCATAAAGCTAGGGAAAGACAGAAGCGTCGCAAGGTCTCCTTTCATGATCATAATAAGGATCATCTCATAAACACCACAGACTCTTCCACACAATGTTTAGCACAGATGTATGAGGTTTCGGAGCCAGAGAGGGTGATTGAGACTCTTCAACTCTTCCCCTTGAACTCCTTTGGTGAATTAGAAACAGAGAAGTTGAGGATACATGCAAATGAATGCAGGGGTAATAATATGTTTTCTTACACAATGATGGAACAAATGGATCATCACCCACCATTAGACCTTCGTTTAAGTTTTATGCCCATTAGCCCAAGCATGGCTTCGTACCCAACACGAAAGCAGAAACCAAAAAAAGGAGAAGCAGGTTGCGAGAGTGAAAGTGCCGAGAAAGGAAAATCGAAGAAGAAAAGAAAAGTTGTTGACACAGCTGAGCTGAGAGAGAGAGAAGGAAGAGTGAGAAAGAGGGAAAAGACTCATCACAGCAGAGAGAAGAAGAAGAAGAAGAACAAGAAGAGCAACAATGGATGTGATAAAGACGCAGCAAATATCATCGAGAGCGATAGAGAAGGCACCGTCGACGTTACCAACAGCTACGCAGTGCCCTTTGAAGAAGATGACAAGGATCCTAGCATCTGGTTTCTTGACCACAATTACCATGAATCAATGTTTTCCATGTTTAAGAGAATAAACGCAAAGGAGCATGTTGTGGGGTGGTATAGCACTGGTCCGAAACTGCGTGAAAATGACCTCGACATTCATGGGTTATTTAACGACTATGTTCCAAATCCTGTTTTGGTTATAATTGATGTCGAACCTAAGGAGCTGGGCATTCCAACAAAAGCGTACTATGCAGTTGAAGAGGTTAAAGAGAATGCCACTCAGAAAAGCCAAAAGGTCTTTGTGCATGTGCCATCTGAGATTGCTGCTCATGAAGTTGAGGAAATAGGAGTGGAACACTTGCTTAGAGATGTGAAGGATACAACCATTAGCACCCTTGCAACAGAGGTGAGTGCAAAACTCACGGCCTTGAAGGGTTTGGATGCAAGACTTAAAGAGATAAGGAGTTACCTTGACCTTGTTATTGATGGAAAGCTTCCATTAAACCATGAGATCCTATACCATCTGCAGGATGTGTTCAACCTGTTACCAAATCTTAATGTCTCAGATCTGATCAAGGCCTTTGCAGTGAAAACCAATGATATGATGCTGGTAATATACCTCTCATCTCTCATTAGAAGTGTAATTGCACTCCACAACTTGATTAATAACAAGATGCTCAACAAAGAACATGAGAGGGCTGAAGACTCGAAATCAGTGCCTGTATCAAGTGCCGCCTCAAGTTAG 1563 0.4216 MEEGMSGFYIKGRSSVCGTKCGRWNPTTEQVKVLTELFSSGLRTPSTDQIQRISNELSFYGKIESKNVFYWFQNHKARERQKRRKVSFHDHNKDHLINTTDSSTQCLAQMYEVSEPERVIETLQLFPLNSFGELETEKLRIHANECRGNNMFSYTMMEQMDHHPPLDLRLSFMPISPSMASYPTRKQKPKKGEAGCESESAEKGKSKKKRKVVDTAELREREGRVRKREKTHHSREKKKKKNKKSNNGCDKDAANIIESDREGTVDVTNSYAVPFEEDDKDPSIWFLDHNYHESMFSMFKRINAKEHVVGWYSTGPKLRENDLDIHGLFNDYVPNPVLVIIDVEPKELGIPTKAYYAVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVEHLLRDVKDTTISTLATEVSAKLTALKGLDARLKEIRSYLDLVIDGKLPLNHEILYHLQDVFNLLPNLNVSDLIKAFAVKTNDMMLVIYLSSLIRSVIALHNLINNKMLNKEHERAEDSKSVPVSSAASS* 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev03g0857 520 Gene3D Cytidine Deaminase, domain 2 232 404 - -
Aev03g0857 520 Pfam Maintenance of mitochondrial structure and function 384 495 IPR024969 -
Aev03g0857 520 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 261 334 IPR000555 GO:0005515|GO:0008233|GO:0008237
Aev03g0857 520 CDD MPN_RPN7_8 259 505 IPR033858 GO:0005838
Aev03g0857 520 PANTHER 26S PROTEASOME REGULATORY PARTICLE NON-ATPASE SUBUNIT 8 254 518 - -
Aev03g0857 520 SMART pad1_6 211 360 IPR000555 GO:0005515|GO:0008233|GO:0008237
Aev03g0857 520 CDD homeodomain 23 83 IPR001356 GO:0003677
Aev03g0857 520 MobiDBLite consensus disorder prediction 186 229 - -
Aev03g0857 520 SUPERFAMILY Homeodomain-like 22 84 IPR009057 -
Aev03g0857 520 MobiDBLite consensus disorder prediction 243 259 - -
Aev03g0857 520 SMART HOX_1 19 86 IPR001356 GO:0003677
Aev03g0857 520 Pfam Homeodomain 21 81 IPR001356 GO:0003677
Aev03g0857 520 Gene3D - 20 88 - -
Aev03g0857 520 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F-RELATED 254 518 - -
Aev03g0857 520 MobiDBLite consensus disorder prediction 178 261 - -
Aev03g0857 520 ProSiteProfiles 'Homeobox' domain profile. 27 82 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev03g0857 Aev-Chr3 6892904 6902253 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev03g0857 8 173 Wox Gene Family AT3G11260 52.880 5.29e-56 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Aev03g0857 MitMem_reg 1.9e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev03g0857 K03038 - gmx:100790393 491.886
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev03g0857 03 6892904 6902253 Aev03g0857 03 6892904 6902253 ECH
Aev03g0857 03 6892904 6902253 Aev07g0632 07 3952910 3953780 PCT