Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev03g0799 ATGTCTCCTCCTAATTCAGATATCAACCATCTTTCTCACCCCTGTATTTATGGGGATTTTGTTTCTTCATATTCAGAGAGAAAGTCTGGTTTTATGAAATGGTTAGGAAAGGTTTTCAAAATAGGATCGAATAGAGGAACAAGTGGTGGTGGTCGTCATCTACAGCAGCCACCAGAGGAAAACATGGTTTGGCGAGCTCCAACTAGATCCTTGGATGACCGTGCTAGATCAAGATCTCGAAAGGATGAAGAAGATCTGAACCGTGCAATTGCACTTTCTTTAGGTGAAGATTTAAGGAGACCAAGAGGATATAGATGGCATAGTGGCAATGATGATGATTATGCAAAGGCACTTCAAGATCGCATGCACTCATCTTCACATCCTCCATATGCTCCTCCACCTTTATATCCCCGGGGATATAGTTTGCCATCAAATGTCAGAATATGTGGAGGGTGCAATAAGGAGATACTATATGGAAATTGTTTAGGATGGATGGATACTTATTTTCATCCAGATTGCTTCCGATGTCACTCTTGTCGCCACCCCATCACCGAACGCGAGTTTTCTTTGTCAGGGAACCGGCCATATCACAAGTCCTGTTTTAAGGAATTGACCCACCCAAAATGTGAAGTTTGCCATCAATATATTCCTATAAATTCTGCTGGTTTGATTGAGTATAGGTGCCATCCATATTGGTACCAAAAGTATTGTCCATCTCATGAGTATGATAACACAGCTAGATGCTGTAGTTGTGAAAGATTAGAGTCGCGGAACGAAAAATACTATAGATTGGACGATGGACGGATTCTGTGTTTTGAGTGCATGGAATCTGCTATAACGGATACCGGTGAATGCCAGCCGCTTTACCATGCCATCAGAGATTATTATGAAGGAATGAACATGAAAATTGACCAACAAGTTCCTATGCTTCTTGTTGGGAGAGATGCACTTAATGAAGCTATTGTTGGGGAAAAGAATGGATTCCATCACTTGCCAGAAACAAGGGGCTTGTGCCTTTCAGAAGAGCAAACTGTCACAAGTGTTCATAGATGGCCAAGAATGGGAGGCCATAGATTGATAGGGATGAGAACTCAACATCAAAGGCTGACAAGAAAATGTGAAGTTACAGCTATTCTTGTTCTCTATGGTCTTCCAAGGTTACTAACAGGCGCTATCCTTGCTCATGAGTTGATGCACGCTTGGTTACGCCTTAAAGGTTACCGTAATCTTGACCCTGGAGTGGAGGAAGGTATCTGCCAGGTTCTGTCATACATGTGGCTTGAGGCAGAAGTAATGTCAGGCTCAAGAAACATGGCATCAACATCATCAGGTTCTTCTTCTTCATCATCATCATCATCAAAGAAAGGTGCAAAGTCACATGTAGAGAACAAGTTGGGAGAGTTTTTCATGAACCAGATTGCAAGTGATTCCTCATCAGCATATGGTGATGGGTTTAGATCTGCTATTGAAGCAGTTAACAAGTATGGTTTGCGGTGTACTCTTGACCATATTCGTTTGACTGGTCATTTTCCACTGTAA 1539 0.4204 MSPPNSDINHLSHPCIYGDFVSSYSERKSGFMKWLGKVFKIGSNRGTSGGGRHLQQPPEENMVWRAPTRSLDDRARSRSRKDEEDLNRAIALSLGEDLRRPRGYRWHSGNDDDYAKALQDRMHSSSHPPYAPPPLYPRGYSLPSNVRICGGCNKEILYGNCLGWMDTYFHPDCFRCHSCRHPITEREFSLSGNRPYHKSCFKELTHPKCEVCHQYIPINSAGLIEYRCHPYWYQKYCPSHEYDNTARCCSCERLESRNEKYYRLDDGRILCFECMESAITDTGECQPLYHAIRDYYEGMNMKIDQQVPMLLVGRDALNEAIVGEKNGFHHLPETRGLCLSEEQTVTSVHRWPRMGGHRLIGMRTQHQRLTRKCEVTAILVLYGLPRLLTGAILAHELMHAWLRLKGYRNLDPGVEEGICQVLSYMWLEAEVMSGSRNMASTSSGSSSSSSSSSKKGAKSHVENKLGEFFMNQIASDSSSAYGDGFRSAIEAVNKYGLRCTLDHIRLTGHFPL* 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev03g0799 512 CDD LIM 176 231 - -
Aev03g0799 512 CDD LIM_DA1 149 201 - -
Aev03g0799 512 MobiDBLite consensus disorder prediction 437 457 - -
Aev03g0799 512 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 175 233 - -
Aev03g0799 512 Pfam LIM domain 149 202 IPR001781 -
Aev03g0799 512 Gene3D Cysteine Rich Protein 140 206 - -
Aev03g0799 512 PANTHER TRANSCRIPTION FACTOR INTERACTOR AND REGULATOR LIM FAMILY-RELATED 21 512 - -
Aev03g0799 512 ProSiteProfiles LIM domain profile. 147 207 IPR001781 -
Aev03g0799 512 MobiDBLite consensus disorder prediction 45 85 - -
Aev03g0799 512 Pfam Protein DA1 298 507 IPR022087 -
Aev03g0799 512 PANTHER PROTEIN DA1-RELATED 2 21 512 IPR045218 -
Aev03g0799 512 MobiDBLite consensus disorder prediction 437 456 - -
Aev03g0799 512 SMART lim_4 148 200 IPR001781 -
Aev03g0799 512 MobiDBLite consensus disorder prediction 66 85 - -
Aev03g0799 512 ProSitePatterns LIM zinc-binding domain signature. 149 183 IPR001781 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev03g0799 Aev-Chr3 6327267 6333008 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Aev03g0799 DA1-like 8.6e-99 CL0126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev03g0799 - - gmx:100798829 878.241
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev03g0799 03 6327267 6333008 Aev07g2369 07 24457585 24463807 PCT