Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev03g0729 ATGGCGTCTCAAGAGCTTAATAAACCTCGCTCACTCCCTCCATACCCTGAGATGATTTTGAGGGCAATTGAAGCACTCAATGAAGAGAATGGTTCAAACAAAACGACAATTTCAAAGTACATAGAATCAACGTACGGTGGATTGCCTCAGGGACACAAGGCACTGCTCAATGTGCACCTTGCCAAGATGAGGGACAGTGGCCAGCTAGTGTTCTGGAAGAACAACTACACCATTCGTGACCCGAATGCTCCCCCGCGACGCGGCCGTGGCAGGCCGCCCAAGGCCAAGGATCCCATGGCCCCGGGCGCTGCCATCTTTTCGCCGCCCAAACCTAGAGGCCGGCCCCCTAAGGACCCGAATGAACTGCCAAGGCCACCCAAGGCCAAGACTTTGGGTGGGAGTGGCAGGCCCAAAGGCCGGCCTAGGAAAATGGCCCGCCCTGTTGGGGGCCTTGATGGATCCCCACCGCCATCTGCAGTGGGGCCCAGTGGGAGGCCTAGAGGTAGACCTCCCAAGATGAGGGAAATTAGTGTTGAGATGTAG 543 0.5654 MASQELNKPRSLPPYPEMILRAIEALNEENGSNKTTISKYIESTYGGLPQGHKALLNVHLAKMRDSGQLVFWKNNYTIRDPNAPPRRGRGRPPKAKDPMAPGAAIFSPPKPRGRPPKDPNELPRPPKAKTLGGSGRPKGRPRKMARPVGGLDGSPPPSAVGPSGRPRGRPPKMREISVEM* 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev03g0729 180 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 11 80 IPR005818 GO:0000786|GO:0003677|GO:0006334
Aev03g0729 180 MobiDBLite consensus disorder prediction 77 180 - -
Aev03g0729 180 SMART h15plus2 9 75 IPR005818 GO:0000786|GO:0003677|GO:0006334
Aev03g0729 180 PRINTS AT-hook-like domain signature 107 118 IPR017956 GO:0003677
Aev03g0729 180 PRINTS AT-hook-like domain signature 162 172 IPR017956 GO:0003677
Aev03g0729 180 PRINTS AT-hook-like domain signature 86 96 IPR017956 GO:0003677
Aev03g0729 180 PRINTS High mobility group protein (HMGY) signature 111 122 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Aev03g0729 180 PRINTS High mobility group protein (HMGY) signature 84 96 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Aev03g0729 180 PRINTS High mobility group protein (HMGY) signature 124 143 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Aev03g0729 180 Pfam linker histone H1 and H5 family 13 73 IPR005818 GO:0000786|GO:0003677|GO:0006334
Aev03g0729 180 PANTHER HISTONE H1 1 175 - -
Aev03g0729 180 Pfam AT hook motif 109 120 IPR017956 GO:0003677
Aev03g0729 180 Pfam AT hook motif 164 174 IPR017956 GO:0003677
Aev03g0729 180 Pfam AT hook motif 87 97 IPR017956 GO:0003677
Aev03g0729 180 Gene3D - 7 87 IPR036388 -
Aev03g0729 180 PANTHER HMG-Y-RELATED PROTEIN A 1 175 IPR031059 GO:0003677|GO:0005634
Aev03g0729 180 SUPERFAMILY "Winged helix" DNA-binding domain 8 88 IPR036390 -
Aev03g0729 180 SMART AT_hook_2 109 121 IPR017956 GO:0003677
Aev03g0729 180 SMART AT_hook_2 135 147 IPR017956 GO:0003677
Aev03g0729 180 SMART AT_hook_2 86 98 IPR017956 GO:0003677
Aev03g0729 180 SMART AT_hook_2 164 176 IPR017956 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev03g0729 Aev-Chr3 5608244 5609212 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev03g0729 18 85 Single Myb Histone (SMH) Gene Family AT1G49950 42.647 3.02e-06 44.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev03g0729 - - gmx:100803968 229.565
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev03g0729 03 5608244 5609212 Aev03g0729 03 5608244 5609212 ECH
Aev07g2305 07 23918907 23919891 Aev03g0729 03 5608244 5609212 PCT