Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev03g0728 ATGGCTTCTTCCTTGGACATGTCACTTGATGATAGAATTAAGAACAGGAGTAACAGAGGGAGAGTTAGAGGACGTGGCAGAGCCCGCTCTGGACGTGGACCAAGCGGGACTCATGGTGATGGAAGAATGAGTGGTACTGGTAATGGTCGAAGAATGATGAATGCTGCTGTTAGTGGTGGAAGAATGACTGGTGGTGTTCGCAGAGGTCCTCTTATGGTTAATGCTCGATCATCATCTTATGCTATTGCCAAGTCTATTCGCAGAACTAGGCCTTTTCCATGGCAGCATGATTTGTTTGAAGATAGCCTACGAGCTGCTGGGATTCAAGGAATTGAAGTCGGCACCAAATTGTATGTGTCCAACTTGGACCATGGGGTAACCAATGAAGACATAAGGGAACTTTTTGCTGAGCTTGGAGAGTTGAAGCGCTTTGCTGTTCATTATGACAAAAATGGGCTTCAAAGTGGTTCAGCTGAAGTTGTCTATACTAGAAGAAGTGATGCATTTGCTGCACTTAAGCGATATAATAATGTCCTTTTGGATGGAAAGCCTATGAAGATTGAGATTGTTGGTTCCAATGCTGAATTGCCTATAACTGCTCGTGTAAATGTCACTGGAGTAAACGGGCAAAGGAAAAGGACAGTTGTAATGACGCCAAGAGGTGCTCGAGGTGGAGGTCCTGCTGTCCACAATCGTGGTGCTGGCTGGGGACATCGAGGTGGTGCTAGGAGTGCAGGTGGTGCTAGGAGTGGCGGTGGTGCAAGGAGTGGGGGCGGACGTGGTCGAGGCCGTGGACGTGGCCGAGGTGGTGGCCGAGCTCGTGGGAAAAAGGAAGCCCTTGAGAAGTCAGCTGAGGATCTTGACAAGGAATTGGATACCTATCATGCTGAGGCGATGCAAATCTAA 906 0.4845 MASSLDMSLDDRIKNRSNRGRVRGRGRARSGRGPSGTHGDGRMSGTGNGRRMMNAAVSGGRMTGGVRRGPLMVNARSSSYAIAKSIRRTRPFPWQHDLFEDSLRAAGIQGIEVGTKLYVSNLDHGVTNEDIRELFAELGELKRFAVHYDKNGLQSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEIVGSNAELPITARVNVTGVNGQRKRTVVMTPRGARGGGPAVHNRGAGWGHRGGARSAGGARSGGGARSGGGRGRGRGRGRGGGRARGKKEALEKSAEDLDKELDTYHAEAMQI* 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev03g0728 301 SUPERFAMILY RNA-binding domain, RBD 36 189 IPR035979 GO:0003676
Aev03g0728 301 Pfam C-terminal duplication domain of Friend of PRMT1 239 296 IPR025715 -
Aev03g0728 301 Gene3D - 111 191 IPR012677 -
Aev03g0728 301 PANTHER THO COMPLEX SUBUNIT 4C 1 301 - -
Aev03g0728 301 MobiDBLite consensus disorder prediction 272 295 - -
Aev03g0728 301 MobiDBLite consensus disorder prediction 218 301 - -
Aev03g0728 301 SMART FoP_duplication_2 230 301 IPR025715 -
Aev03g0728 301 Coils Coil 277 301 - -
Aev03g0728 301 SMART rrm1_1 116 188 IPR000504 GO:0003723
Aev03g0728 301 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 115 192 IPR000504 GO:0003723
Aev03g0728 301 MobiDBLite consensus disorder prediction 1 51 - -
Aev03g0728 301 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 117 185 IPR000504 GO:0003723
Aev03g0728 301 PANTHER RNA AND EXPORT FACTOR BINDING PROTEIN 1 301 - -
Aev03g0728 301 CDD RRM_THOC4 115 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev03g0728 Aev-Chr3 5597064 5599909 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev03g0728 114 189 Eukaryotic Initiation Factors Gene Family AT2G23350 39.474 5.90e-10 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev03g0728 K12881 - gmx:100801491 399.053
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev03g0728 03 5597064 5599909 Aev03g0728 03 5597064 5599909 ECH