Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev03g0563 ATGAGTGGTTTGGGAGTTGTGGAGTGTCTTAGGCCACTTGTTGAGACCAATGCTTGGGATTTTGGTGTTGTTTGGAAATATGGGGATGACCCTTCTAGGTTTATTGAGTGGATGGGTTGCTGTTGTAGAGGGAGTTGCAGTGAAAACATTGATGTGGTGAAGTTCAAAGATGAAGAAATGGATCAACAATTCAACAACTTGGTTCCAATTTGTAGGGATACCCAATTTCAGCATCCAGTTAGAACAGTGGCTTGTGAAGCTCTTTCTCAGCTTCCTTTTGCAATGTCTCTCTATTCTGGTGTCCATGGAGAGGTTGCAATATCACAACAACCAAGATGGTCTTTTCAGGAGGAAATTGGAACGCAAGTTTTGATTCCTATTCTTGGCGGCCTAATCGAACTCTTCGCGGCGAAGCTTATTCCAAAGGATGTAAGTATGATAGAGTTCATTAGATCACACTGTTGTGTCTCATTGAAGCAAGAAGCTATATCAGCACAGAGATACACCACTATGAACTTCAATGAACAGCTTCAATCAGAAGAACAATACACACAGAATTGGCCACAACTCACATTAGCAATGAATGCAGCAAATTGGTTCAACTCCCATCCTTACATTGAAGGAACCTCAAGTGGATCTAACCCTTCAAATGAATACACATCATTTGATTCAGACTTTATTTGCTTGCCTCAGCATGAATATCTGAATCAATCAGTGAAAACTTCTCCTACCCCTAAAACAAAAGGGCCCAATTACAATGAAACTTCAGGGAAACAACAGAGAGGATTGAGTTCAAATTGTGAAAATAACAAAGAAGGTAAAAGAAAATTTGTCAAGGATCCTAAAAAGGAAGGCTGCCATGCTAAAAATCTTGCTACAGAGAGGAAAAGGAGGAACAGGATAAAAAATGGGCTTTACACTTTAAGGTCTCTGGTTCCAAAGATAACAAAGATGGATAGAGCATCGATTCTTGCAGACGCGATGGACTATATAAAGGAATTACAAGGACAAGTGAAAGAACTTAAGGATGAGGCCAGGACTTTGGAAGAAGAGGGTAGTGAGAACAACACACCGCAATCGATGACTCCAACAGACAAAGAACATGGAGGAACCAGAAGTCTCCCTCTTACTGAGCTCAATCAAAGTAGTTCTAATTCCACTAAACCAATGGAGATGAAGGTGCAAGCAGAAGTGAATCATATAAGCAGGACAGAGTTGTTAATCAAGGTATACTTTGAGCAAAAGGCAGGTGGGTTTTCAAGGTTGATGGAAGCTATACATTCATTTGGACTACAGGTGGAAAATGCCAATATGACAACACTTGATGGAAAATCCTTGATCATTCTGACAGTTGAGGTAGCCAAGAAGGATATTCAACCAAAAGAACTGATACAGTATTTGACAGAGGAAACAAGTTGA 1419 0.4024 MSGLGVVECLRPLVETNAWDFGVVWKYGDDPSRFIEWMGCCCRGSCSENIDVVKFKDEEMDQQFNNLVPICRDTQFQHPVRTVACEALSQLPFAMSLYSGVHGEVAISQQPRWSFQEEIGTQVLIPILGGLIELFAAKLIPKDVSMIEFIRSHCCVSLKQEAISAQRYTTMNFNEQLQSEEQYTQNWPQLTLAMNAANWFNSHPYIEGTSSGSNPSNEYTSFDSDFICLPQHEYLNQSVKTSPTPKTKGPNYNETSGKQQRGLSSNCENNKEGKRKFVKDPKKEGCHAKNLATERKRRNRIKNGLYTLRSLVPKITKMDRASILADAMDYIKELQGQVKELKDEARTLEEEGSENNTPQSMTPTDKEHGGTRSLPLTELNQSSSNSTKPMEMKVQAEVNHISRTELLIKVYFEQKAGGFSRLMEAIHSFGLQVENANMTTLDGKSLIILTVEVAKKDIQPKELIQYLTEETS* 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev03g0563 472 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 9 152 IPR025610 -
Aev03g0563 472 PANTHER TRANSCRIPTION FACTOR BHLH90 65 471 - -
Aev03g0563 472 SMART finulus 291 340 IPR011598 GO:0046983
Aev03g0563 472 Gene3D - 278 352 IPR036638 GO:0046983
Aev03g0563 472 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 285 334 IPR011598 GO:0046983
Aev03g0563 472 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 65 471 - -
Aev03g0563 472 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 287 358 IPR036638 GO:0046983
Aev03g0563 472 MobiDBLite consensus disorder prediction 352 367 - -
Aev03g0563 472 MobiDBLite consensus disorder prediction 345 389 - -
Aev03g0563 472 MobiDBLite consensus disorder prediction 374 389 - -
Aev03g0563 472 Coils Coil 324 351 - -
Aev03g0563 472 ProSiteProfiles ACT domain profile. 407 472 IPR002912 -
Aev03g0563 472 MobiDBLite consensus disorder prediction 239 267 - -
Aev03g0563 472 MobiDBLite consensus disorder prediction 268 284 - -
Aev03g0563 472 MobiDBLite consensus disorder prediction 239 284 - -
Aev03g0563 472 Pfam Helix-loop-helix DNA-binding domain 292 335 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev03g0563 Aev-Chr3 4146075 4148465 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev03g0563 287 465 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G16910 42.553 2.75e-31 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Aev03g0563 bHLH-MYC_N 2.8e-16 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev03g0563 - - gmx:100807261 584.334
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev03g0563 03 4146075 4148465 Aev03g0563 03 4146075 4148465 ECH