Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev03g0548 ATGATCCGAATATCAAGCGGGTCGGGTCGCCGGATTCTGAATCTTCCGGCGGTTCATCCTTCAGAGGACATTTCTCTCTCTACCCTTCTCTCTTCTCTGATCACTCTCTCTCACAGAATCTGCACCTTCTCCTCCAAATGCAAGTTCTTCCCATGCAACAAGCGAAACGCCACGACATGCGTTCGATTCGTCGAGGTTCTTCTCTGTTTCTTCGAGGAAATCCAAGACCAAAGTTGGAACCTTCCGGGTTCGGTTCTTCTCCCCTTGCTGGAGCTCCATTTCACCTTCCAGAAGCTTCTATTCCTTCTAGAAGATTGCTCCCGCGAGGGTGCGAGGTTGTGGATGTTAATGGAGTCGGGTCGTGTCGCTACCCTGTTCCGGGTCATATCCGGGTCGGTTGCCACTGCTGTTGATGTTTTTCCTTTGGGTTCTGTTGGGGTTTCTGTGGAAGCCAAGGAGCAGGTGGAGCTTGTGATGAAGCAAGCAAGGAAGGCAAAGTTTGAACTTGAGGGTGATGATGAGAGAGCTATGAAGTGTGTTGTGTCGATTCTGAAGAAGTTCGAGGAGAAGGTTGTTCCTAATGAGTGTGATCTGAGATGGGTTCTTGAGTATATTGGGGTTAGAGGGTGGAGTGAGTGTAACAAGGAGGTGGAGTTTTTAAGGGGTGAAATTGAGGTTGAGATTTTGAATGATGAGAGTGGAAGAAAGGTGGGGTTTTTATGGAGTTTGATGGGGTTCATGAGTTATTGCAGAAGTATTGTGATGTTGGAGGTTGTTGATTGTGAAGAAGAGAATCATAAATCAAACTCAAAACATGATCCAAGAAGTGGGATCAGTGTTTTGAGTTGCTTCAAGTTTGATGATTTTCGATGCCCCATCTCTCTGGAGTTGATGACTGATCCGGTGACAGTAGAGACAGGACACACTTATGATCGTTCTTCGATCCTCAAATGGTTCAGGAGTGGGAACCATGTTTGTCCCAAGACGGGTAAGAGGCTCAGCAGCATTGAATTGGTTCCTAATTTGGTGATCCGGAGGCTGGTTCATCAGTATTGCTCTGAGAATGGCATTGGAATCCCTTTTCTTGCTGATCAGGCTCGCAGGAATCGTGGCGTCATGAGGACGGCGCAGCCAGGGAGTTTGGCGGCAGAGGAAGCCATGAGAATGGTGGCAAGTTTCCTCAGTGAAAGGCTTGAGATTGGAACAAGGGGAGAGAAGAACAGAGCTGCATATGAGATTAGAGTTCTTTCCAAAACAAACAATTTTAACAGGTCTTGTTTGGTGGAATCTGGTTCTGTCCCTCTTTTGTTGAAGCTTTTGACATGGAGGAATGAATCAACACAAGAGAATGCAATTGCAGCACTTCTAAACCTGTCAAAGCACCCCAAAGGTAGAGCTTTGATGGTTGAGAATTGGGGGCTAGAATTGATTATAGGTGTCTTGAGTAAAGGGCTAAAGATGGAAGCTCGCCACCACGCCGCTGCCACTTTGTTCTACCTTGCTTCAAGTAATGAGGAGTATGCTAAAATGATAGGGGAGGAGGCAGAAGCAATTCCATCTTTGGTTAGGCTAATCAAAGATGGATCCGAACGCGGCAAGAAGAATGGCTTAGTTGCAATCTTTGGCCTTCTCATCCACCATGAAAACCATAGGAAGGTGCTTGAATCCGGGGCAGTTCCTTCGCTTGTTAACATGTTGAAAACATGTGAGAATGAAGATCTTGTCACAGATTCACTAGCAGTTCTAGCAACACTGGCAGAGAAAATTGATGGAGCAACAACAATCCTTGATTATGGGGCTTTGCTTGTTGCTGTTGAAATCTTGAGGTCTTCAACTTCAAGGATGGGAAAGGAACAGTGTGTGTCATTGTTGCTCTCTCTTTCAGTACATGGAGGCATAGATGTGGTTGCTCATTTGGTGAAGAGCCCTTCACTGATGGGATCATTATATTCGCAACTCAGTGAAGGCACGTCGCGAGCGAGCAAAAAGGCGAGTGCTCTCATAAGGACTCTCCATGATTTTTATGAAAGGAGGTCCTCTGGCTTTAAGGCTTCAGTTCTTCCACAAGAACAATTTATTCATGTGTGGTAA 2091 0.4601 MIRISSGSGRRILNLPAVHPSEDISLSTLLSSLITLSHRICTFSSKCKFFPCNKRNATTCVRFVEVLLCFFEEIQDQSWNLPGSVLLPLLELHFTFQKLLFLLEDCSREGARLWMLMESGRVATLFRVISGSVATAVDVFPLGSVGVSVEAKEQVELVMKQARKAKFELEGDDERAMKCVVSILKKFEEKVVPNECDLRWVLEYIGVRGWSECNKEVEFLRGEIEVEILNDESGRKVGFLWSLMGFMSYCRSIVMLEVVDCEEENHKSNSKHDPRSGISVLSCFKFDDFRCPISLELMTDPVTVETGHTYDRSSILKWFRSGNHVCPKTGKRLSSIELVPNLVIRRLVHQYCSENGIGIPFLADQARRNRGVMRTAQPGSLAAEEAMRMVASFLSERLEIGTRGEKNRAAYEIRVLSKTNNFNRSCLVESGSVPLLLKLLTWRNESTQENAIAALLNLSKHPKGRALMVENWGLELIIGVLSKGLKMEARHHAAATLFYLASSNEEYAKMIGEEAEAIPSLVRLIKDGSERGKKNGLVAIFGLLIHHENHRKVLESGAVPSLVNMLKTCENEDLVTDSLAVLATLAEKIDGATTILDYGALLVAVEILRSSTSRMGKEQCVSLLLSLSVHGGIDVVAHLVKSPSLMGSLYSQLSEGTSRASKKASALIRTLHDFYERRSSGFKASVLPQEQFIHVW* 697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev03g0548 696 SUPERFAMILY ARM repeat 405 671 IPR016024 -
Aev03g0548 696 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 18 5 686 - -
Aev03g0548 696 Pfam Armadillo/beta-catenin-like repeat 423 459 IPR000225 GO:0005515
Aev03g0548 696 Pfam U-box domain 287 355 IPR003613 GO:0004842|GO:0016567
Aev03g0548 696 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 287 358 IPR013083 -
Aev03g0548 696 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 557 600 IPR000225 GO:0005515
Aev03g0548 696 ProSiteProfiles U-box domain profile. 284 358 IPR003613 GO:0004842|GO:0016567
Aev03g0548 696 SMART arm_5 504 545 IPR000225 GO:0005515
Aev03g0548 696 SMART arm_5 546 587 IPR000225 GO:0005515
Aev03g0548 696 SMART arm_5 420 460 IPR000225 GO:0005515
Aev03g0548 696 SMART arm_5 461 502 IPR000225 GO:0005515
Aev03g0548 696 Gene3D - 385 674 IPR011989 -
Aev03g0548 696 SMART Ubox_2 288 351 IPR003613 GO:0004842|GO:0016567
Aev03g0548 696 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 431 473 IPR000225 GO:0005515
Aev03g0548 696 CDD RING-Ubox_PUB 289 331 IPR045210 -
Aev03g0548 696 PANTHER U BOX DOMAIN-CONTAINING 5 686 - -
Aev03g0548 696 SUPERFAMILY RING/U-box 287 357 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev03g0548 Aev-Chr3 4016121 4018211 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev03g0548 1 696 U-box Gene Family AT1G60190 44.554 0.0 546
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev03g0548 - - gmx:100795816 832.017