Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev03g0461 ATGTCTAAGGGTTCCATCGTGTTGATTTTTCTTTGTTTGGCAGTAACATTTCCCACCCTTTTTGGAAATGTGTTAGAGACTGATGAGTATTGGAATGAACATAAATCTGAGTTTGATGCCTACTGGCAGGAAAGAGCCAAGGCTGCAGAGAACGTTAACATGCAAGCCTACACTGCTGATCCATATGCTGTCTCTGGCAACCTCACCTCCGCTGTTAGCGAAGTCCTTACCGGGAAGAAGGGACGAAGGCTGTTGACAAAGGGAGGAAAAAAGACTGCAGGGCCATGCCAAGCCACCAACCCCATTGACAGCTGCTGGAGGTGTGACCCCAATTGGGCAAACAACCGTCAAAAGCTTGCAAGCTGTGTTCAAGGATTCGGCAAGAACGCCACCGGTGGAAAGGGTGGACCATACTATGTTGTGACTGACCCTTCAGATAACGACATGGTGAACCCCAAACCAGGAACCCTGAGGCACGCCGTGACAAGGACTGGTCCATTGTGGATCATCTTCGCTCGCAGCATGATCATCACCCTTAAACAGGAGCTCATCATGGCCGGCAACAAGACCATCGATGGCAGAGGATTCGACATCCACATCTGCAAAGGTGGAGGCATCACCATCCAGTTCATCAGCAATGTCATCATCCACGGCCTCAAGATCTACGACATCGTCCCCTTGGGAGGAGGTCTGATCAGAGACTCAGAGACCCATTACGGGTTCAGGACTCGCAGTGACGGAGACGGAATCTCCATCTTCGGCGCCAGCAACATCTGGATTGACCACGTTTCCATGAGGAACTGCTCCGACGGACTCATCGACGCCATCATGGGTTCCACCGGAATCACCATCTCTAACGGGCATTACACCGATCACAACGAGGTCATGCTCTTCGGTGCCAGTGACAGTTACGACGGCGACAAGATCTTGCAGATCACTCTGGCATTCAACCACTTCGGAAAGAGGTGCGTGCAGAGGATGCCTAGGGTTAGGTTTGGGTTCGTGCACGCCGTGAACAACGACTACACCCACTGGGAAATGTACGCCATGGGAGGTAGCAAGGGACCCATAATCATCAGTGAAGGGAACAGATTCATCGCCCCAGAAAACCGATTCGCGAAGGAGATCACAAAGAGAGAGTACACAGAGGAGAGATTATGGAAGGACTGGCAGTGGAGATCGATCAACGACGAGTACTTGAACGGAGCATTCTTCGTGCAATCAGGCCCTGAATTGTACGATAAGGTGGCCCACAACGACAAGATGAAGGCCATGCCAGGATCATATGTTGGCAAGATCACACGCTTTGCTGGTGCGCTTGGATGCAGAGTTGGCAAAGCCTGCTAG 1347 0.5152 MSKGSIVLIFLCLAVTFPTLFGNVLETDEYWNEHKSEFDAYWQERAKAAENVNMQAYTADPYAVSGNLTSAVSEVLTGKKGRRLLTKGGKKTAGPCQATNPIDSCWRCDPNWANNRQKLASCVQGFGKNATGGKGGPYYVVTDPSDNDMVNPKPGTLRHAVTRTGPLWIIFARSMIITLKQELIMAGNKTIDGRGFDIHICKGGGITIQFISNVIIHGLKIYDIVPLGGGLIRDSETHYGFRTRSDGDGISIFGASNIWIDHVSMRNCSDGLIDAIMGSTGITISNGHYTDHNEVMLFGASDSYDGDKILQITLAFNHFGKRCVQRMPRVRFGFVHAVNNDYTHWEMYAMGGSKGPIIISEGNRFIAPENRFAKEITKREYTEERLWKDWQWRSINDEYLNGAFFVQSGPELYDKVAHNDKMKAMPGSYVGKITRFAGALGCRVGKAC* 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev03g0461 448 PRINTS Pollen allergen Amb family signature 146 171 IPR018082 -
Aev03g0461 448 PRINTS Pollen allergen Amb family signature 326 345 IPR018082 -
Aev03g0461 448 PRINTS Pollen allergen Amb family signature 348 367 IPR018082 -
Aev03g0461 448 PRINTS Pollen allergen Amb family signature 182 198 IPR018082 -
Aev03g0461 448 PRINTS Pollen allergen Amb family signature 390 414 IPR018082 -
Aev03g0461 448 PRINTS Pollen allergen Amb family signature 122 139 IPR018082 -
Aev03g0461 448 PRINTS Pollen allergen Amb family signature 246 267 IPR018082 -
Aev03g0461 448 PRINTS Pollen allergen Amb family signature 419 442 IPR018082 -
Aev03g0461 448 Gene3D - 99 441 IPR012334 -
Aev03g0461 448 SMART amb_all 174 371 IPR002022 -
Aev03g0461 448 Pfam Pectate lyase, N terminus 36 83 IPR007524 GO:0030570
Aev03g0461 448 PANTHER PECTATE LYASE 18-RELATED 5 448 IPR045032 GO:0030570
Aev03g0461 448 PANTHER PECTATE LYASE 5 448 - -
Aev03g0461 448 SUPERFAMILY Pectin lyase-like 92 442 IPR011050 -
Aev03g0461 448 Pfam Pectate lyase 185 365 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev03g0461 Aev-Chr3 3362369 3364362 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev03g0461 1 448 Polysaccharide Lyase AT1G14420 55.484 0.0 516
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev03g0461 K01728 - gmx:100798579 672.544
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev03g0461 03 3362369 3364362 Aev03g0461 03 3362369 3364362 ECH