Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev03g0458 ATGTCGCAGTTGCAGCTACAGCTACACTCTCTTCCATCACTCTCTTCTTCTTCTTCTTCTTCCATCAAGCTCTGTCCAAACCACTCCTTCTTCTCTCCAAAGTCCTCTCCTTTCACCGTTTCTTCTAAGCCCTTAGCCATCAGATGCCGCCACTCAGAGCTTTTCGACCAGAAAACCTTTTCCTCTGCACCATCAACTTCTACCCCATCTCCTTCAGTTGGAGCTCTGCCACCTAGGGTTTATGTTGGTCACTCCATTTACAAAGGAAAGGCTGCTCTTACAGTGACTCCTAGGCCTCCGGAATTCATGCCGCTTGATTCAGGGGCATTCAAAATATCTAGGGAAGGTTTTTTGCTGCTTCAGTTTGCCCCTGCCATTGGTTCGCGCCAGTATGATTGGACTAGAAAGCAGATCTTCTCGCTATCAGTGGGTGAAATGGGAAGTGTGATTAGCCTTGGTTCAAGGGACACTTGTGAATTTTTTCATGATCCCTTGAAGGGAAAAAGTGATGAAGGTAAAGTCAGGAAAGTTTTGAAGATTGAGCCTCTTCCAGATGGTTCTGGTCACTTCTTTAACCTCAGTGTTCAAAACAAGCTTGTCAATGTTGATGAAAACATCTATATCCCTATTACAAAAGCAGAGTTGGCAGTTTTGAGCTCAGTTTTCAATTATATCATGCCATACCTTCTAGGTTGGCATACCTTTGCAGACTCCATAAAGCCAGAGGATTCCAAGGGACTGGATAATGCCAACTCTACATATGGAGGAGACTATGATTGGAAAAACAAATTCTGA 795 0.4415 MSQLQLQLHSLPSLSSSSSSSIKLCPNHSFFSPKSSPFTVSSKPLAIRCRHSELFDQKTFSSAPSTSTPSPSVGALPPRVYVGHSIYKGKAALTVTPRPPEFMPLDSGAFKISREGFLLLQFAPAIGSRQYDWTRKQIFSLSVGEMGSVISLGSRDTCEFFHDPLKGKSDEGKVRKVLKIEPLPDGSGHFFNLSVQNKLVNVDENIYIPITKAELAVLSSVFNYIMPYLLGWHTFADSIKPEDSKGLDNANSTYGGDYDWKNKF* 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev03g0458 264 SUPERFAMILY ssDNA-binding transcriptional regulator domain 78 262 IPR009044 GO:0003677|GO:0006355
Aev03g0458 264 Pfam Whirly transcription factor 86 221 IPR013742 GO:0003697|GO:0006355|GO:0006952
Aev03g0458 264 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 7 261 IPR013742 GO:0003697|GO:0006355|GO:0006952
Aev03g0458 264 Gene3D Transcriptional Coactivator Pc4; Chain A 73 251 IPR009044 GO:0003677|GO:0006355
Aev03g0458 264 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY1, CHLOROPLASTIC 7 261 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev03g0458 Aev-Chr3 3350992 3353517 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev03g0458 1 260 Whirly Transcription Factor Family AT1G14410 61.049 1.69e-115 330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Whirly Aev03g0458 Whirly 5.1e-60 CL0609
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev03g0458 - - gmx:100789252 385.185
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev03g0458 03 3350992 3353517 Aev03g0458 03 3350992 3353517 ECH
Aev05g1415 05 10353006 10356722 Aev03g0458 03 3350992 3353517 PCT