Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev03g0439 ATGGCTGATCCTCAGAAAGCTAGTCCTGGAGATAGGGATATTGAGCAGGCAATTACATCTCTTAAAAAAGGATCGCATCTGCTAAAGTACGGGCGAAGAGGGAAGCCAAAGTTCTGCCCATTCAGGCTTTCCAATGATGAATCTTTACTCATATGGTACTCTGGGAAGGATGAGAAACATCTTAAGCTCAGTACAGTTTCAAAGATCATTCCGGGGCAGCGAACTGCAACATTTCAACGATATCCTCGGCCTGAAAAAGAGTATCAGTCATTTTCACTTATATACAATGATAGGTCCTTGGATTTGATATGTAAGGACAAAGATGAGGCTGAGATCTGGTTTGTTGGTCTGAAGGCATTAGTTAGCCGTGGTAACAATCGAAAGTGGAGACAAGAACCAAGATATGAAAGTCTGTATTCTGATAGTCCCTGCTCTGGCACAAGAAAATCTTCTCCAGCAATTGCACCTTTTGACCCCGGAGATACTGATGGTGTTGCTTTTGACAATTCTACTCCAAATAAATGGGTAAAGGCTTTCAACGAAATAATTTCATATACAGCAGCTACCAAGAGTTCCAGTCAAGCTGAATCCATAGCAAATTGCTCTTTATCCCCTGGGTCTGTGGATGAGTCAAACAATCGAAACTCTGCATCTGAGACATTTCGGGTTAGTTTATCGAGTGCTATAAGTTCATCCAGCCAAGGTTCTTTTCATGAAGATTTTGAAGACTTAGGTGATATCTTCTTTTGGGGAGAAGGTATCAGTGAAGGAATTCTTGGTGGTGGTGTGCATAGAGTTGGAACCATATCCAATTCTGAGATAGATGCATTCCTCCCCAAGGCATTGGATTCAAAAGTAGTTCTAGATGTTCATAGTATTGGTTGTGGTGCCAAACATGCAGTTCTAGTTACCAAGCAAGGAGAAATATTTAGCTGGGGGGAGGAGTCGGGAGGTAGGCTTGGACATGGTATAGAAGTGGATGTTTTTCACCCTAAGCTCATTGAGACTCTTAGTGGTGTGAATATAGAATTAGTAGCATGTGGAGAATATCATAGTTGTGCTGTCACATATTCTGGGGATCTATATACTTGGGGTGATGGTACTCACAACTCTGGCTTGCTTGGGCATGGAAATGAGGTCAGTCACTGGATTCCTAAAAAAGTAGGTGGTAGCATAGAGGGTTTACGTGTATCATATGTGTCCTGTGGACCTTGGCACACAGCTATTGTTACGTCAGTTGGGCAGCTGTTCACATTTGGGGATGGAACTTTTGGTGCCTTAGGCCATGGAGATCATAGTAGTTCAAATATTCCTCGAGTAGTAGAAACTTTGAGAGGACTGAGAACCACCAGGGTTTCCTGTGGTGTTTGGCACACAGCTGCAGTTGCTGAGGTGATAAATGAATATGAGGAATCTTCTACACGCTCTTCTCATGGAAAACTGTTCACCTGGGGTGATGGGGATAAATGGCAACTCGGTCATGTTGATAGGGAACCTAGACTAGTTCCTGAGTGTGTGATTGCATTGGAAAATGAAAACATTTGTCGAGTGGCTTGTGGCCACAGTATTACAATTGCTTTGACAACCTCAGGACATGTGTATACAATGGGCAGTACAGCTTATGGACAACTTGGCTCTCCCGAAACTGATGGGACAGTCCCTACACGTGTTGAAGATAAGCTTACTTCCAGTTTTGTTGAAGATATTGCCTGTGGTTCTCATCATGTTGTGGTCCTGACTTCAAAGGCAGAGGTTTATACATGGGGAAAAGGTTTGAATGGGCAATTGGGTCATGGAGACAATGGTAATCGGAATAAACCTACACTTGTAGAGTTTTTGAAAGATAAGCAAGTGAAAACTGTTGTTTGTGGTTCAAACTTTACTACTGTTGTATGTATTCATAAATGGGTTTCAAGTGTTGATCATTCTGTGTGTTCTGGTTGTCGTAATCCATTTGGATTCAGAAGAAAGCGTCATAATTGTTACAATTGTGGACTTGTATTTTGCAAAGTTTGCACAAGCAGGAAATCAATGAAAGCTTCCCTTGCTCCAAATTCCAACAAGCCATATCGGGTTTGTGATGACTGTTACTATAAACTTAGGAAAGCTGCAGAATCAGTTTCCTTGGTGCAAACTCCTTCCTTGAGAAGTGTAAGTTTGCAAGACAGCAGTAGGACCACTAAAATACCAGGAAAACTACTAAAGCTTGCATCTTTTGGTTCTATTAATCAATCAGAAACTAGTCCTTCAAAGCCTCTGGAAACACATTATACCTATCTTTTTCCAGCTTTGAATGGAAAATTACAGATGGGGGTTTGTGCTCCTATAAAATCATCAAATTCTCTATCTGGAGAATCTAGGAAACACCTTACAGTCTCTGAGCCTGCTACAAGAATATCTTGTCAATCAGCATCTTCAATTTCACCAAAGTCAAGCCCACGACAATCATGTGAAGATAACCAGGATGGTTCAAAGTACAAAAATGACATTCTAACTCAAGAAGTTATAAATTTAAGGGCACAGGTTGAAGAGCTTACCAATAAGTCAAAAAATCTTGAGGCTGAACTCGAGAGAACAACAAAGCAATTGAAGGAAGCGACTGCAGTAGCTACAGATGAAGCTGCAAAGTGTAAATCTGCAAAAGAGGTTATAAAGTCATTGACTGCTCAGCTGAAGGAAATGGTGCAGACACTTCCAGAAGGACATGATGCCGATGCCAGTGCAGATTACTATGCTGAAACCACTATTAATAGTCTAAATCAATCCTTAGATGAAAGCCTTATAGCAAACAGTAGCACTCCAGAAAATGAATCCAGCAGCAATGCAACAAATCGGACATTGCCTAATGGTGCCAAAACACAAAGTGGAAAGGGAGAGCGGGTGGTGCAGGATGAACCAGGTGTGTACATAACTTTGGCCACCCTGCCCAATGGTGGTAATGAACTTAAGCGCGTCCGCTTCAGTCGGAGGCATTTCACAGAAGAACAAGCTGAGAAGTGGTGGGCTGAAAACGGAGCCAAAGAACCGCTCAGTATGCATTTTGTCAATGTGCTCATTCCATTCCACTTTGCATTCTTGGCCACATACTCTTTGCATTCTGCTGCTAAACTATTATCTGTTAACTTGCTAATACAAGGAGGATTCTGCCATGCATACTGCAGAGGCGCGAGGGCGGACGGACGACGAGCAAAGACCACTAGCGCACTGTTGGACCCACGAGCAGAGACGGAGACGCGAACAAAGAAGGAGGCGCGAGCACAGGCGGAGGCACGAGCACTGGCAAAGGTGCGCGAGGCTGGACGGACAACGAGCAGAGGCGGAGGCGCGCGAGGCTGGACGGACGGCTGA 3348 0.4334 MADPQKASPGDRDIEQAITSLKKGSHLLKYGRRGKPKFCPFRLSNDESLLIWYSGKDEKHLKLSTVSKIIPGQRTATFQRYPRPEKEYQSFSLIYNDRSLDLICKDKDEAEIWFVGLKALVSRGNNRKWRQEPRYESLYSDSPCSGTRKSSPAIAPFDPGDTDGVAFDNSTPNKWVKAFNEIISYTAATKSSSQAESIANCSLSPGSVDESNNRNSASETFRVSLSSAISSSSQGSFHEDFEDLGDIFFWGEGISEGILGGGVHRVGTISNSEIDAFLPKALDSKVVLDVHSIGCGAKHAVLVTKQGEIFSWGEESGGRLGHGIEVDVFHPKLIETLSGVNIELVACGEYHSCAVTYSGDLYTWGDGTHNSGLLGHGNEVSHWIPKKVGGSIEGLRVSYVSCGPWHTAIVTSVGQLFTFGDGTFGALGHGDHSSSNIPRVVETLRGLRTTRVSCGVWHTAAVAEVINEYEESSTRSSHGKLFTWGDGDKWQLGHVDREPRLVPECVIALENENICRVACGHSITIALTTSGHVYTMGSTAYGQLGSPETDGTVPTRVEDKLTSSFVEDIACGSHHVVVLTSKAEVYTWGKGLNGQLGHGDNGNRNKPTLVEFLKDKQVKTVVCGSNFTTVVCIHKWVSSVDHSVCSGCRNPFGFRRKRHNCYNCGLVFCKVCTSRKSMKASLAPNSNKPYRVCDDCYYKLRKAAESVSLVQTPSLRSVSLQDSSRTTKIPGKLLKLASFGSINQSETSPSKPLETHYTYLFPALNGKLQMGVCAPIKSSNSLSGESRKHLTVSEPATRISCQSASSISPKSSPRQSCEDNQDGSKYKNDILTQEVINLRAQVEELTNKSKNLEAELERTTKQLKEATAVATDEAAKCKSAKEVIKSLTAQLKEMVQTLPEGHDADASADYYAETTINSLNQSLDESLIANSSTPENESSSNATNRTLPNGAKTQSGKGERVVQDEPGVYITLATLPNGGNELKRVRFSRRHFTEEQAEKWWAENGAKEPLSMHFVNVLIPFHFAFLATYSLHSAAKLLSVNLLIQGGFCHAYCRGARADGRRAKTTSALLDPRAETETRTKKEARAQAEARALAKVREAGRTTSRGGGARGWTDG* 1116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev03g0439 1115 Pfam Regulator of chromosome condensation (RCC1) repeat 414 462 IPR000408 -
Aev03g0439 1115 Pfam Regulator of chromosome condensation (RCC1) repeat 530 579 IPR000408 -
Aev03g0439 1115 Pfam Regulator of chromosome condensation (RCC1) repeat 479 527 IPR000408 -
Aev03g0439 1115 Pfam Regulator of chromosome condensation (RCC1) repeat 307 355 IPR000408 -
Aev03g0439 1115 Pfam Regulator of chromosome condensation (RCC1) repeat 358 409 IPR000408 -
Aev03g0439 1115 Pfam Regulator of chromosome condensation (RCC1) repeat 584 630 IPR000408 -
Aev03g0439 1115 Gene3D - 13 131 IPR011993 -
Aev03g0439 1115 PRINTS Chromosome condensation regulator RCC1 signature 416 430 IPR000408 -
Aev03g0439 1115 PRINTS Chromosome condensation regulator RCC1 signature 400 416 IPR000408 -
Aev03g0439 1115 PRINTS Chromosome condensation regulator RCC1 signature 520 538 IPR000408 -
Aev03g0439 1115 PRINTS Chromosome condensation regulator RCC1 signature 359 375 IPR000408 -
Aev03g0439 1115 PRINTS Chromosome condensation regulator RCC1 signature 578 599 IPR000408 -
Aev03g0439 1115 PRINTS Chromosome condensation regulator RCC1 signature 309 325 IPR000408 -
Aev03g0439 1115 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 452 462 IPR000408 -
Aev03g0439 1115 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 293 303 IPR000408 -
Aev03g0439 1115 CDD PH_PLC_plant-like 12 122 - -
Aev03g0439 1115 Pfam Transcription factor regulating root and shoot growth via Pin3 959 1007 IPR013591 -
Aev03g0439 1115 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 245 306 IPR000408 -
Aev03g0439 1115 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 583 634 IPR000408 -
Aev03g0439 1115 MobiDBLite consensus disorder prediction 1093 1115 - -
Aev03g0439 1115 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 359 413 IPR000408 -
Aev03g0439 1115 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 479 530 IPR000408 -
Aev03g0439 1115 Pfam Transcription factor BRX N-terminal domain 872 899 IPR027988 -
Aev03g0439 1115 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 648 708 IPR013083 -
Aev03g0439 1115 PANTHER REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY WITH FYVE ZINC FINGER DOMAIN-CONTAINING PROTEIN 14 1006 - -
Aev03g0439 1115 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 531 582 IPR000408 -
Aev03g0439 1115 Coils Coil 828 869 - -
Aev03g0439 1115 MobiDBLite consensus disorder prediction 929 953 - -
Aev03g0439 1115 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 14 1006 - -
Aev03g0439 1115 SMART fyve_4 631 702 IPR000306 GO:0046872
Aev03g0439 1115 MobiDBLite consensus disorder prediction 800 825 - -
Aev03g0439 1115 Coils Coil 877 897 - -
Aev03g0439 1115 MobiDBLite consensus disorder prediction 137 163 - -
Aev03g0439 1115 MobiDBLite consensus disorder prediction 929 960 - -
Aev03g0439 1115 CDD FYVE_like_SF 645 697 - -
Aev03g0439 1115 SUPERFAMILY RCC1/BLIP-II 245 636 IPR009091 -
Aev03g0439 1115 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 307 358 IPR000408 -
Aev03g0439 1115 SUPERFAMILY FYVE/PHD zinc finger 635 710 IPR011011 -
Aev03g0439 1115 Gene3D - 472 647 IPR009091 -
Aev03g0439 1115 MobiDBLite consensus disorder prediction 800 819 - -
Aev03g0439 1115 Pfam Pleckstrin homology domain 15 121 IPR001849 -
Aev03g0439 1115 ProSiteProfiles BRX domain profile. 958 1013 IPR013591 -
Aev03g0439 1115 SUPERFAMILY PH domain-like 13 121 - -
Aev03g0439 1115 Gene3D - 176 369 IPR009091 -
Aev03g0439 1115 Gene3D - 370 471 IPR009091 -
Aev03g0439 1115 Pfam FYVE zinc finger 635 701 IPR000306 GO:0046872
Aev03g0439 1115 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 414 465 IPR000408 -
Aev03g0439 1115 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 639 701 IPR017455 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev03g0439 Aev-Chr3 3167565 3177976 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev03g0439 956 1004 Major Intrinsic Protein MIP AT1G31880 59.184 1.18e-12 68.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev03g0439 - - lang:109355968 1388.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev03g0439 03 3167565 3177976 Aev03g0439 03 3167565 3177976 ECH