Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev03g0408 ATGAAATCTGTAAGGCTCCTCGTGCTCCCTATTCTCCCGCATCACCGATTTAACCGCTCATTCGGTCGTATTCATGTATGCTATATGATGGGCAGGGTAAAGCTGAAGATAAAGAGATTGGAGAACACGAATGGGCGGCAGGCAACATATGCTAAAAGAAAGAATGGAATCATAAAAAAGGCTACAGAGCTATCTATACTCTGTGACATTGATATTATTCTTCTCATGTTCTCTCCAACTGGAAAGCCTTCTTTATGCAGAGGCAGGCGCAGTAACTTCGAGGAGGTTATTGCAAAGTTTGCTCAACTAACTCCCCAAGAAAGAGCAAAAAGGAAGTTGGAGAGTCTTGAAGCACTGAAGAAAACATTTAAGAAGTTAGATCATGATGTAAATATACAAGAATTTCTGGGCACAAGTAGTCAAACCGTTGAGGACCTAAGTAATCAAGCCAGACTATTACAGGCTCAAATTTCCGAAACACACAAGAAACTAAGCCATTGGAATGAGTTTGATAAAATCAACAATGTGGAACAACTAGGACACATGGAAAATTCACTCAGGGAGTCACTTAATCAAATTCGAACTCGTAAGGAAAATCTTAAAAAGCAGCAACTTTTGTCCATGCAATGTAATAATCAGTTCAATGAAATGCACATTCCCTTCAGAATGGGTGCTGATCAGCATCTCCAACCTCTACAATGGATTGCTAATGGTGATAGCCAACATATAGTTTTACCTGAGGACTCAAGTTTGCTTCTCCACAAAGATGTAGAGGGATCTGCAAGCTCATCATTTGGGAGCTATGCCAGTTATCTTGGCTCAAGTAGTAAAACTGACATGTCAAATTCTGGCCAAGAAAATGGTGTTCTTAGTGACTTGAGCAGTACAGGTCCATTGAGATTACCATTGACCGGGCAGTTTCCATACTTACCATACAATTTCAATTTACTGAATGATTTCAAGTACCAACCAGCTCCAGAGATCAATCCACACGAAAACCCGGTCGGCTATCATGTGAATGGAAGCTTTGAAGCCCCTAGACCTGGCTATGACAATAACCATCATGCCTGGGCTTCCACATCAGGGCCTTGTTCTGTTACCATGTTTGATGAGCACTTGTATGCACAGGCAAGTTTCCCTCAAGTCAACTTTGGCTTAACATAG 1164 0.4132 MKSVRLLVLPILPHHRFNRSFGRIHVCYMMGRVKLKIKRLENTNGRQATYAKRKNGIIKKATELSILCDIDIILLMFSPTGKPSLCRGRRSNFEEVIAKFAQLTPQERAKRKLESLEALKKTFKKLDHDVNIQEFLGTSSQTVEDLSNQARLLQAQISETHKKLSHWNEFDKINNVEQLGHMENSLRESLNQIRTRKENLKKQQLLSMQCNNQFNEMHIPFRMGADQHLQPLQWIANGDSQHIVLPEDSSLLLHKDVEGSASSSFGSYASYLGSSSKTDMSNSGQENGVLSDLSSTGPLRLPLTGQFPYLPYNFNLLNDFKYQPAPEINPHENPVGYHVNGSFEAPRPGYDNNHHAWASTSGPCSVTMFDEHLYAQASFPQVNFGLT* 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev03g0408 387 Gene3D - 43 126 IPR036879 GO:0003677|GO:0046983
Aev03g0408 387 ProSiteProfiles MADS-box domain profile. 30 82 IPR002100 GO:0003677|GO:0046983
Aev03g0408 387 SUPERFAMILY SRF-like 31 124 IPR036879 GO:0003677|GO:0046983
Aev03g0408 387 Coils Coil 106 126 - -
Aev03g0408 387 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL65 ISOFORM X1 30 377 - -
Aev03g0408 387 CDD MADS 31 83 - -
Aev03g0408 387 PANTHER SERUM RESPONSE FACTOR HOMOLOG 30 377 - -
Aev03g0408 387 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 39 83 IPR002100 GO:0003677|GO:0046983
Aev03g0408 387 Coils Coil 143 163 - -
Aev03g0408 387 PRINTS MADS domain signature 67 88 IPR002100 GO:0003677|GO:0046983
Aev03g0408 387 PRINTS MADS domain signature 52 67 IPR002100 GO:0003677|GO:0046983
Aev03g0408 387 PRINTS MADS domain signature 32 52 IPR002100 GO:0003677|GO:0046983
Aev03g0408 387 Coils Coil 183 203 - -
Aev03g0408 387 SMART madsneu2 30 89 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev03g0408 Aev-Chr3 2945862 2948878 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev03g0408 30 380 Type I MADS-box Gene Family AT2G03060 50.653 1.94e-111 329
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Aev03g0408 SRF-TF 6.4e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev03g0408 - - gmx:100811701 577.015