Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev03g0342 ATGGAGGATCAGGGAGTTCTGGGTGGTGTTGGGAGAGAGGAAGAGGAAGATGAGTTTTGCAGTTGTTGTGAAGGTGAGGAAGAAGCATGGAAAGAAGCAGAGGAGCAGGTGGCTGAAGAGTTGAAGGATGAACTTGATGAATTTTCTGTTAAATTGTTCTTTAAGGGGGTGTCATTAGCTGGGGTTGAAGAATTCAGTTCTGGATTTTCTGGAATTGGAGTTTTTATGGAAAGAGCACCTGGTCTTCCTGTTATTCGGGTGCAGAAAAAGCTTGATTTTTATGCAGAGGAGCCACTTGCTGACTATTTTGCTCTCTTGGATGGCTTGCTGGAAGCTAAGAAGAACAAGATCCATCGCGTTCGTGCTTTCACAGATTCCGAGTTGTTGTATGATCAGATAAAATTTGAGAAAAATCTTGACATGCCACTTTTGATGGCAATGAGACAAAGGATTTTGGAACATGCCAACAAGTTTGAAGATTTTGTTCTGAATCTTGTTCCCAGTATTGATCTTGAGCAGCCACTGCAATTGGCCAAAGTAGCAATCGGACTTATCACTTTTCCTGTAAATGGTGAGATATTACTTGAGAGCTGTTCTATTTGCTGGGAGGACAAGCCATCCCCAATTATGGTCACCATGAAATGTTCACACAAGTTCTGTTCACATTGCTTGAGGTCTTATGGTGATAAAAAAGTAGAAGAATGTCAAGTCCCTATAAGATGTCCTCAACCAGAATGCAAGTATTACATATCTGCCACTGAGTGCGAGACTTTCCTTCCCTTCAATTCCTTTAAATCTTTAGAAAAAGCCCTTACAGAAGCAAATATTCTGCATTCAGATAGAATTTACTGTCCATATCCAAATTGCTCTGTTCTCCTTGATCCTCATGAATGCTTATCAGCTAGTGCTAATTCATCTAGCCAGCCGGACAATTGCTGTGTTGAATGTCCTGTTTGTCAGAGGTTTATCTGTGTGGATTGTAAGGTCCCTTGGCATTCTTCTATGAGCTGTGAAGAATTTCAGAATCTTCCAGAGGAGGAGAGAGATCCTTCTGACGTTACGCTACATCTCCTTGCACAGAATAAAAGGTGGAAGCGTTGTCTCCAATGTCGTCGGATGATTGAGCTTACTCAAGGTTGTTACCACATGACATGCTGGTGTGGTCATGAGTTTTGTTATTCTTGTGGTGCGGAATACCGGGATGGTCGACAGACATGTCAATGTGCATTTTGGGACGAAGACAACTCTGAAGACTCGATGCCGCACTCTCTACAAGAATCAGAACAATGGGCATGGGAGACTTTCAACTCTCTTCCCATGATCATGGATGCATACTCAGACCAAGAACGATCACAGCTTGAGCTTATACAGAGGTTTCTGGCTGGTGGTTTCAGTCTGAGTGATCATCACCCTCACCAATCTCCTCCTCGCTGCACAGACTCCATTGCGGATGCAATGAAGGATCTACATCAGCTTCCATGGCTAGAGAGATTTGTGTCCGTTATAAGCGACGATTACGAAGATTATCTTCAGTGA 1536 0.4297 MEDQGVLGGVGREEEEDEFCSCCEGEEEAWKEAEEQVAEELKDELDEFSVKLFFKGVSLAGVEEFSSGFSGIGVFMERAPGLPVIRVQKKLDFYAEEPLADYFALLDGLLEAKKNKIHRVRAFTDSELLYDQIKFEKNLDMPLLMAMRQRILEHANKFEDFVLNLVPSIDLEQPLQLAKVAIGLITFPVNGEILLESCSICWEDKPSPIMVTMKCSHKFCSHCLRSYGDKKVEECQVPIRCPQPECKYYISATECETFLPFNSFKSLEKALTEANILHSDRIYCPYPNCSVLLDPHECLSASANSSSQPDNCCVECPVCQRFICVDCKVPWHSSMSCEEFQNLPEEERDPSDVTLHLLAQNKRWKRCLQCRRMIELTQGCYHMTCWCGHEFCYSCGAEYRDGRQTCQCAFWDEDNSEDSMPHSLQESEQWAWETFNSLPMIMDAYSDQERSQLELIQRFLAGGFSLSDHHPHQSPPRCTDSIADAMKDLHQLPWLERFVSVISDDYEDYLQ* 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev03g0342 511 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 195 277 IPR013083 -
Aev03g0342 511 Pfam Reverse transcriptase-like 65 167 IPR002156 GO:0003676|GO:0004523
Aev03g0342 511 SUPERFAMILY RING/U-box 351 414 - -
Aev03g0342 511 ProSiteProfiles TRIAD supradomain profile. 194 412 IPR044066 -
Aev03g0342 511 Gene3D - 335 494 - -
Aev03g0342 511 Gene3D - 50 183 IPR036397 GO:0003676
Aev03g0342 511 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 15 510 - -
Aev03g0342 511 Coils Coil 31 51 - -
Aev03g0342 511 Pfam IBR domain, a half RING-finger domain 273 337 IPR002867 -
Aev03g0342 511 Pfam IBR domain, a half RING-finger domain 358 406 IPR002867 -
Aev03g0342 511 ProSitePatterns Zinc finger RING-type signature. 215 224 IPR017907 -
Aev03g0342 511 SUPERFAMILY RING/U-box 197 273 - -
Aev03g0342 511 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 15 510 IPR031127 GO:0004842|GO:0016567
Aev03g0342 511 SMART ibrneu5 347 406 IPR002867 -
Aev03g0342 511 SMART ibrneu5 265 337 IPR002867 -
Aev03g0342 511 ProSiteProfiles Zinc finger RING-type profile. 198 242 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev03g0342 Aev-Chr3 2543634 2545565 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev03g0342 49 397 C3H Transcription Factor Family AT2G19610 26.389 1.56e-29 118
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev03g0342 - - gmx:100783040 831.632