LGRPv2

Gene search

Sequence information

Show entries

Search:

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aev03g0251	ATGCCTGGCAGTTTAGAAGCGCTGGATTTGGGCGTTCACATACCCTACCACTTCAGGTGCCCAATCTCCCTCGAGCTCATGCGCGACCCCGTCACCGTCTGCACCGGTCAGACCTACGACCGCCCCAGCATAGAGTCCTGGGTCGCCACCGGCAACACCACCTGCCCGGTCACCAGAGCCACTCTCACCGACTTCACCCTAATCCCCAACCACACGCTCCGCCGCCTAATCCAAGACTGGTGCGTCGCCAACCGCGCTTTTGGCGTCGAGCGCATTCCCACTCCCAAACAGCCTGCAGACCCTTCCCTCCTCCGCTCCCTCCTCAACCAAGCCTCCTCCGATTCCGCCCCAACCCAAATCCGCCTCTCCTCCCTGCGCCGACTCAGAGGACTCGCTCGTGACTCCGACAAGAATCGTTCCCTCATTGCCTCCCTCAACGCCACCCACATCCTATTAACGATCGTTTTCGGCGCCTCCTCCGACGAGTTGAGCCACGACTCCCTCGCTTTACTCGTCATGTTCTCGCTCACCGAGATCGATTGCGAGTCTATTGCTTCCGATTCGGAGAAGATCCAATACCTATCGCGCCTATTGTTCCACAATTCGTTCGAGGTCCGAGTTAACTCGGCCGCGTTGATTGAAATCGTCGCCGCAGGGACTCACTCGCCGGATCTCCGATCTCAGATCAGCAATGTCGACGAAATCTACGAAGGCGTGGTTGAGATTTTGAGGAACCCGATCTCGTACCCGCGCGCGCTCAAGGTAGGGATCAAGGCTCTGTTCGCGCTGTGTTTGGTGAAGCAGACGCGTCACAAGGCGGTGGCGGCGGGAGCGCCGGCGGTGCTAGTGGACCGCCTCGCCGATTTCGAGAAGTGCGACGCGGAGAGGGCGTTGGCGACGGTGGAGCTCCTTTGCCGCATTCCGGCGGGGTGCGCGGCGTTCGCGGGCCACGCGCTGACGGTGGCGCTGCTGGTGAAGATAATACTGAAGATCTCGGATCGGGCGACGGAGTACGCGGCGGGGGCGCTGCTTGCGCTGTGCTCCGAGTCGGAGAGGTGCCAGAGGGAGGCGGTGGCGGCGGGGGTGCTGACTCAGCTGCTGCTGCTTGTTCAGAGCGATTGCACGGAGAGGGCGAAGAGGAAGGCGCAGCTGTTGCTCAAGCTGCTTCGGGATTCGTGGCCTCAAGATTCCATCGGAAATTCTGACGATTTTGCATGCAGCCAGCTCGTGGTGGTGCCCTTTTGA	1245	0.6096	MPGSLEALDLGVHIPYHFRCPISLELMRDPVTVCTGQTYDRPSIESWVATGNTTCPVTRATLTDFTLIPNHTLRRLIQDWCVANRAFGVERIPTPKQPADPSLLRSLLNQASSDSAPTQIRLSSLRRLRGLARDSDKNRSLIASLNATHILLTIVFGASSDELSHDSLALLVMFSLTEIDCESIASDSEKIQYLSRLLFHNSFEVRVNSAALIEIVAAGTHSPDLRSQISNVDEIYEGVVEILRNPISYPRALKVGIKALFALCLVKQTRHKAVAAGAPAVLVDRLADFEKCDAERALATVELLCRIPAGCAAFAGHALTVALLVKIILKISDRATEYAAGALLALCSESERCQREAVAAGVLTQLLLLVQSDCTERAKRKAQLLLKLLRDSWPQDSIGNSDDFACSQLVVVPF*	415

Showing 1 to 1 of 1 entries

Previous1Next

Annotation information

Show entries

Search:

Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Aev03g0251	414	SUPERFAMILY	ARM repeat	103	389	IPR016024	-
Aev03g0251	414	Pfam	U-box domain	14	85	IPR003613	GO:0004842\|GO:0016567
Aev03g0251	414	PANTHER	WDSAM1 PROTEIN	4	410	IPR045185	GO:0061630
Aev03g0251	414	CDD	RING-Ubox_PUB	18	59	IPR045210	-
Aev03g0251	414	Gene3D	-	93	403	IPR011989	-
Aev03g0251	414	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	13	87	IPR013083	-
Aev03g0251	414	SUPERFAMILY	RING/U-box	12	90	-	-
Aev03g0251	414	SMART	Ubox_2	17	80	IPR003613	GO:0004842\|GO:0016567
Aev03g0251	414	ProSiteProfiles	U-box domain profile.	13	87	IPR003613	GO:0004842\|GO:0016567
Aev03g0251	414	PANTHER	RING-TYPE E3 UBIQUITIN TRANSFERASE	4	410	-	-

Showing 1 to 10 of 10 entries

Previous1Next

Duplication type information

Show entries

Search:

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aev03g0251	Aev-Chr3	1938622	1939866	Transposed

Showing 1 to 1 of 1 entries

Previous1Next

Functional genes information

Show entries

Search:

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aev03g0251	1	414	U-box Gene Family	AT1G49780	67.139	0.0	545

Showing 1 to 1 of 1 entries

Previous1Next

Pathway information

Show entries

Search:

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aev03g0251	-		-	gmx:100778730	694.886

Showing 1 to 1 of 1 entries

Previous1Next

Event-related genes

Show entries

Search:

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Aev03g0251	03	1938622	1939866	Aev03g0251	03	1938622	1939866	ECH

Showing 1 to 1 of 1 entries

Previous1Next