Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Aev03g0219 | ATGGCTCAAGCAACCAACGGTGGGGATCTGAATCAGCAGGGGCAGCAGCAGCCGCCGCATCAGCAGCAGTGGGCGCAGCCGCATCAGTATCAGCAGCAATGGATGGCCATGCAGTACCCTGCGACGGCCATGGCCATGATGCAGCAGCAGATGATGATGTATCCTCAGCATTACATGCCTTATCTCCACCACCACTACCAGGCACCTCCGCCTCCTCCTCACCACCACCAGCAGTTCAAGCAGCAGACTACTCCGCCGCCGCAAAGTCAGTCGCCTCAGCCGCCGCACAGCAACAATAACCACCACTACCAGCAGAAGCAGCAGCAGCAGCCTGGCTCCAACGACGAGATCAGGACGATCTGGCTCGGTGACCTTCACCATTGGATGGACGAGAACTACCTCCTCAACTGCTTCGCTCACACCGGCGAGGTTTTATCAGCCAAGGTCATTCGGAATAAGCAAACTGGTCAGTCGGAGGGATATGGGTTTGTGGAGTTTTATACCCGACCAACAGCTGAGAAAGTGTTGCAGAACTATAATGGTACGATGATGCCAAGTACAGATCAGGCATTCCGACTGAATTGGGCTACATTCAGTACAGGCGATAAGCGATCCGATGCTACTACTTCTGATCTCTCTATATTTGTGGGGGACTTGGCCATAGATGTTACTGATGCTATGCTGCAAGAGACTTTTGCTAGCAGATATTCATCTATTAAGGGAGCTAAAGTTGTCATTGATTCTAATACTGGTCGTTCAAAAGGCTATGGTTTTGTTAGGTTTGGTGATGAAAATGAGAGGACAAGGGCGATGACGGAAATGAATGGCGTTTATTGTTCAAGTAGGCCTATGAGAATAGGTGTCGCGACACCCAAGAAAACTTATGGCTATCAGCAGCAATATCAATTTTCTTCACAAGCTGTGGTGTTAGCTGGTGGTGGACATGCATCTAATGGAACTATGGCCCAAGGTTCCCAGTCTGAAGGGGATCTTAACAACACTACTATATTTGTTGGAGGCCTTGATTCTGATATAAGTGATGAGGATCTAAGACAACCATTTTTGCAGTTTGGTGAAGTTGTATCTGTGAAAATTCCAGTGGGTAAAGGGTGTGGTTTTGTTCAGTTTGCTGACAGAAAGAATGCTGAGGAAGCAATTCAGGCATTGAATGGCACTGTAATTGGCAAGCAGACAGTGCGTCTTTCTTGGGGTCGCAGTCCAGGAAATAAGCATTGGAGATCCGATTCCAATGGAAACCATTATGGTGGTCAAGGTTATGGAGGAGGCCATGGATATGCTGTGAAACAGAACCATGATATAGCCATGCAGCCTGCAGCCGCAGTTCAAGGGGCTTCATAA | 1359 | 0.4864 | MAQATNGGDLNQQGQQQPPHQQQWAQPHQYQQQWMAMQYPATAMAMMQQQMMMYPQHYMPYLHHHYQAPPPPPHHHQQFKQQTTPPPQSQSPQPPHSNNNHHYQQKQQQQPGSNDEIRTIWLGDLHHWMDENYLLNCFAHTGEVLSAKVIRNKQTGQSEGYGFVEFYTRPTAEKVLQNYNGTMMPSTDQAFRLNWATFSTGDKRSDATTSDLSIFVGDLAIDVTDAMLQETFASRYSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVYCSSRPMRIGVATPKKTYGYQQQYQFSSQAVVLAGGGHASNGTMAQGSQSEGDLNNTTIFVGGLDSDISDEDLRQPFLQFGEVVSVKIPVGKGCGFVQFADRKNAEEAIQALNGTVIGKQTVRLSWGRSPGNKHWRSDSNGNHYGGQGYGGGHGYAVKQNHDIAMQPAAAVQGAS* | 453 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Aev03g0219 | 452 | CDD | RRM3_NGR1_NAM8_like | 333 | 404 | - | - | |
Aev03g0219 | 452 | Gene3D | - | 204 | 307 | IPR012677 | - | |
Aev03g0219 | 452 | Gene3D | - | 62 | 203 | IPR012677 | - | |
Aev03g0219 | 452 | PANTHER | TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED | 21 | 451 | - | - | |
Aev03g0219 | 452 | CDD | RRM2_SECp43_like | 211 | 290 | - | - | |
Aev03g0219 | 452 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 118 | 198 | IPR000504 | GO:0003723 | |
Aev03g0219 | 452 | SUPERFAMILY | RNA-binding domain, RBD | 325 | 431 | IPR035979 | GO:0003676 | |
Aev03g0219 | 452 | PANTHER | POLYADENYLATE-BINDING PROTEIN RBP47B | 21 | 451 | - | - | |
Aev03g0219 | 452 | SUPERFAMILY | RNA-binding domain, RBD | 84 | 200 | IPR035979 | GO:0003676 | |
Aev03g0219 | 452 | MobiDBLite | consensus disorder prediction | 94 | 114 | - | - | |
Aev03g0219 | 452 | Gene3D | - | 311 | 438 | IPR012677 | - | |
Aev03g0219 | 452 | SMART | rrm1_1 | 119 | 194 | IPR000504 | GO:0003723 | |
Aev03g0219 | 452 | SMART | rrm1_1 | 213 | 287 | IPR000504 | GO:0003723 | |
Aev03g0219 | 452 | SMART | rrm1_1 | 335 | 402 | IPR000504 | GO:0003723 | |
Aev03g0219 | 452 | MobiDBLite | consensus disorder prediction | 65 | 114 | - | - | |
Aev03g0219 | 452 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 212 | 291 | IPR000504 | GO:0003723 | |
Aev03g0219 | 452 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 214 | 283 | IPR000504 | GO:0003723 | |
Aev03g0219 | 452 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 120 | 186 | IPR000504 | GO:0003723 | |
Aev03g0219 | 452 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 336 | 399 | IPR000504 | GO:0003723 | |
Aev03g0219 | 452 | MobiDBLite | consensus disorder prediction | 1 | 27 | - | - | |
Aev03g0219 | 452 | SUPERFAMILY | RNA-binding domain, RBD | 209 | 314 | IPR035979 | GO:0003676 | |
Aev03g0219 | 452 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 334 | 406 | IPR000504 | GO:0003723 | |
Aev03g0219 | 452 | CDD | RRM1_SECp43_like | 119 | 199 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Aev03g0219 | Aev-Chr3 | 1699963 | 1703683 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Aev03g0219 | 213 | 420 | Eukaryotic Initiation Factors Gene Family | AT4G34110 | 28.638 | 3.00e-18 | 85.5 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Aev03g0219 | - | - | gmx:100798089 | 596.275 |