Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Aev03g0219 ATGGCTCAAGCAACCAACGGTGGGGATCTGAATCAGCAGGGGCAGCAGCAGCCGCCGCATCAGCAGCAGTGGGCGCAGCCGCATCAGTATCAGCAGCAATGGATGGCCATGCAGTACCCTGCGACGGCCATGGCCATGATGCAGCAGCAGATGATGATGTATCCTCAGCATTACATGCCTTATCTCCACCACCACTACCAGGCACCTCCGCCTCCTCCTCACCACCACCAGCAGTTCAAGCAGCAGACTACTCCGCCGCCGCAAAGTCAGTCGCCTCAGCCGCCGCACAGCAACAATAACCACCACTACCAGCAGAAGCAGCAGCAGCAGCCTGGCTCCAACGACGAGATCAGGACGATCTGGCTCGGTGACCTTCACCATTGGATGGACGAGAACTACCTCCTCAACTGCTTCGCTCACACCGGCGAGGTTTTATCAGCCAAGGTCATTCGGAATAAGCAAACTGGTCAGTCGGAGGGATATGGGTTTGTGGAGTTTTATACCCGACCAACAGCTGAGAAAGTGTTGCAGAACTATAATGGTACGATGATGCCAAGTACAGATCAGGCATTCCGACTGAATTGGGCTACATTCAGTACAGGCGATAAGCGATCCGATGCTACTACTTCTGATCTCTCTATATTTGTGGGGGACTTGGCCATAGATGTTACTGATGCTATGCTGCAAGAGACTTTTGCTAGCAGATATTCATCTATTAAGGGAGCTAAAGTTGTCATTGATTCTAATACTGGTCGTTCAAAAGGCTATGGTTTTGTTAGGTTTGGTGATGAAAATGAGAGGACAAGGGCGATGACGGAAATGAATGGCGTTTATTGTTCAAGTAGGCCTATGAGAATAGGTGTCGCGACACCCAAGAAAACTTATGGCTATCAGCAGCAATATCAATTTTCTTCACAAGCTGTGGTGTTAGCTGGTGGTGGACATGCATCTAATGGAACTATGGCCCAAGGTTCCCAGTCTGAAGGGGATCTTAACAACACTACTATATTTGTTGGAGGCCTTGATTCTGATATAAGTGATGAGGATCTAAGACAACCATTTTTGCAGTTTGGTGAAGTTGTATCTGTGAAAATTCCAGTGGGTAAAGGGTGTGGTTTTGTTCAGTTTGCTGACAGAAAGAATGCTGAGGAAGCAATTCAGGCATTGAATGGCACTGTAATTGGCAAGCAGACAGTGCGTCTTTCTTGGGGTCGCAGTCCAGGAAATAAGCATTGGAGATCCGATTCCAATGGAAACCATTATGGTGGTCAAGGTTATGGAGGAGGCCATGGATATGCTGTGAAACAGAACCATGATATAGCCATGCAGCCTGCAGCCGCAGTTCAAGGGGCTTCATAA 1359 0.4864 MAQATNGGDLNQQGQQQPPHQQQWAQPHQYQQQWMAMQYPATAMAMMQQQMMMYPQHYMPYLHHHYQAPPPPPHHHQQFKQQTTPPPQSQSPQPPHSNNNHHYQQKQQQQPGSNDEIRTIWLGDLHHWMDENYLLNCFAHTGEVLSAKVIRNKQTGQSEGYGFVEFYTRPTAEKVLQNYNGTMMPSTDQAFRLNWATFSTGDKRSDATTSDLSIFVGDLAIDVTDAMLQETFASRYSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVYCSSRPMRIGVATPKKTYGYQQQYQFSSQAVVLAGGGHASNGTMAQGSQSEGDLNNTTIFVGGLDSDISDEDLRQPFLQFGEVVSVKIPVGKGCGFVQFADRKNAEEAIQALNGTVIGKQTVRLSWGRSPGNKHWRSDSNGNHYGGQGYGGGHGYAVKQNHDIAMQPAAAVQGAS* 453
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Aev03g0219 452 CDD RRM3_NGR1_NAM8_like 333 404 - -
Aev03g0219 452 Gene3D - 204 307 IPR012677 -
Aev03g0219 452 Gene3D - 62 203 IPR012677 -
Aev03g0219 452 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 21 451 - -
Aev03g0219 452 CDD RRM2_SECp43_like 211 290 - -
Aev03g0219 452 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 118 198 IPR000504 GO:0003723
Aev03g0219 452 SUPERFAMILY RNA-binding domain, RBD 325 431 IPR035979 GO:0003676
Aev03g0219 452 PANTHER POLYADENYLATE-BINDING PROTEIN RBP47B 21 451 - -
Aev03g0219 452 SUPERFAMILY RNA-binding domain, RBD 84 200 IPR035979 GO:0003676
Aev03g0219 452 MobiDBLite consensus disorder prediction 94 114 - -
Aev03g0219 452 Gene3D - 311 438 IPR012677 -
Aev03g0219 452 SMART rrm1_1 119 194 IPR000504 GO:0003723
Aev03g0219 452 SMART rrm1_1 213 287 IPR000504 GO:0003723
Aev03g0219 452 SMART rrm1_1 335 402 IPR000504 GO:0003723
Aev03g0219 452 MobiDBLite consensus disorder prediction 65 114 - -
Aev03g0219 452 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 212 291 IPR000504 GO:0003723
Aev03g0219 452 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 214 283 IPR000504 GO:0003723
Aev03g0219 452 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 120 186 IPR000504 GO:0003723
Aev03g0219 452 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 336 399 IPR000504 GO:0003723
Aev03g0219 452 MobiDBLite consensus disorder prediction 1 27 - -
Aev03g0219 452 SUPERFAMILY RNA-binding domain, RBD 209 314 IPR035979 GO:0003676
Aev03g0219 452 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 334 406 IPR000504 GO:0003723
Aev03g0219 452 CDD RRM1_SECp43_like 119 199 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Aev03g0219 Aev-Chr3 1699963 1703683 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev03g0219 213 420 Eukaryotic Initiation Factors Gene Family AT4G34110 28.638 3.00e-18 85.5
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev03g0219 - - gmx:100798089 596.275