Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev03g0173 ATGGATTTCTCCAAGAAGCGCAAAGCGGAGGAGAACGGCGACGCTGATTCCCCGCTTCCAGCACAACAACCTCCCTCCGCCGCAGCTGCAACCACCCCCCTCACCCCAGACGATATCCGAAAGATACTGCAGCCCTTCACGCAGGAGCAGCTCCTTGACCTCCTCCAATCGGCGTCCCTCCGCCACCCTGATGTCCTTGAATCCGTACGCTCCGTCGCCGACCGTGACTCCTCCCTCCGCAAGCTCTTCGTTCGCGGCCTCGCCGGCCAGACCACCAGCGACACCCTCCGCGCTGTCTTCTCCGCCTTCGGCGACATCGACGAGGCCATCGTCATCTTCGACAAGCACACCGGAAAATCCAAGGGATACGGTTTCGTAACCTTTTCCCACGTCGACGGGGCCATCATCGCTCTCAAGGAGCCCAGCAAAAAGATCGATGGCCGCATGACCGTCGCCCAGCTTGCTGCATCTGGTGGTCCCGGTGCCGCAGCTGGTGGCCCCGGCGCGGCATCTGGCACTGACAACATCGCCGCCCGAAAGGTGTTCGTAGGTAACGTCCCATTCGAAATTTCGTCCGAGAGGCTCCTGAGCTACTTCCTCGCCTTCGGCGAAGTGGAAGAGGGTCCCCTAGGGTTTGATAAGAGTAGTGGGAAGACCAAAGGGTTCGCGTTCTTCGTGTACAAGACCGAAGAGGGTGCAAGGGCTTGTTTGGCAGAGCCCACGAAGACTATTGATGGCCACAATGTGTTTTGCAAGTTGGCTGTGGATGGCAAGAAAGCGAAGCCGCAGAATCCTACTTCTGGGTTTGCAGGGGATGGCATGCATGTTCAGCAGCAGCAGCAGCAACAACAACAACAACAACCACCTTCTTACAATGCTCCTAGCTTGATTTCGCAGTATGGTGGATATGTTGGTGGTGGTGGTGGAGGACATGGGAACGGTTATGGGATGCAGTCTTCGGTGCCGTCGTATGGAAACCCTGTTCCAGCTGGTGGAGGGTATGGGCAAGCAATTGGTGGTTATGGGAGTTCACAGTTTGGTGGGCCGGTTTCTGGTGACTATGGTACAAGGTTGCCCCTCAATTCTGGGGGGTATATGGATGGGTCGCATTATGGTGGTTTGCCCACGTCTGCGCTTCCTACACAGCAGCCACCTCCGCCCGTAATGCCAAGACCTGCTCCTCCTGGAGGCATGTATCAAGGCGTGCCACCGTATTATTGA 1221 0.5725 MDFSKKRKAEENGDADSPLPAQQPPSAAAATTPLTPDDIRKILQPFTQEQLLDLLQSASLRHPDVLESVRSVADRDSSLRKLFVRGLAGQTTSDTLRAVFSAFGDIDEAIVIFDKHTGKSKGYGFVTFSHVDGAIIALKEPSKKIDGRMTVAQLAASGGPGAAAGGPGAASGTDNIAARKVFVGNVPFEISSERLLSYFLAFGEVEEGPLGFDKSSGKTKGFAFFVYKTEEGARACLAEPTKTIDGHNVFCKLAVDGKKAKPQNPTSGFAGDGMHVQQQQQQQQQQQPPSYNAPSLISQYGGYVGGGGGGHGNGYGMQSSVPSYGNPVPAGGGYGQAIGGYGSSQFGGPVSGDYGTRLPLNSGGYMDGSHYGGLPTSALPTQQPPPPVMPRPAPPGGMYQGVPPYY* 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev03g0173 406 Gene3D - 21 171 IPR012677 -
Aev03g0173 406 MobiDBLite consensus disorder prediction 259 296 - -
Aev03g0173 406 SMART rrm1_1 81 153 IPR000504 GO:0003723
Aev03g0173 406 SMART rrm1_1 180 252 IPR000504 GO:0003723
Aev03g0173 406 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 179 267 IPR000504 GO:0003723
Aev03g0173 406 MobiDBLite consensus disorder prediction 270 296 - -
Aev03g0173 406 MobiDBLite consensus disorder prediction 379 406 - -
Aev03g0173 406 Gene3D - 172 290 IPR012677 -
Aev03g0173 406 MobiDBLite consensus disorder prediction 371 406 - -
Aev03g0173 406 PANTHER GEO13361P1-RELATED 1 374 - -
Aev03g0173 406 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 181 248 IPR000504 GO:0003723
Aev03g0173 406 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 82 148 IPR000504 GO:0003723
Aev03g0173 406 SUPERFAMILY RNA-binding domain, RBD 70 168 IPR035979 GO:0003676
Aev03g0173 406 CDD RRM_RBM24_RBM38_like 80 154 - -
Aev03g0173 406 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 80 157 IPR000504 GO:0003723
Aev03g0173 406 MobiDBLite consensus disorder prediction 1 34 - -
Aev03g0173 406 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1 374 - -
Aev03g0173 406 SUPERFAMILY RNA-binding domain, RBD 174 269 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev03g0173 Aev-Chr3 1403597 1404817 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev03g0173 171 264 C2H2 Transcription Factor Family AT2G19380 36.458 1.32e-12 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev03g0173 K12741 - gmx:100804230 429.869