Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev03g0113 ATGGACACTCATCAGCACACAGCAGCAAGCCTTGTTAGGTCTGAGGGGAAGAGGGGCCTGAGTGATGAGGAGTCAGAGGAAGAGGAGTACTCATCAGAGGCTCTAGCTTTGGAGGGCTATGGAGGAGGAGAAGAGTACGGCGGGAGGAGGAAGAGGGTGATGACAGATCTCTACAGCAGCAGCAACAGCAAGAGAGGAGGGTCCAGAGCTGGTGGTGGAAGCTCAGGAGCAGCAGCATCAATGGCACCATCTTGTCAGGTGGATGGCTGTGACTCTGATCTGAGTGAGGCTAAGCAGTATCACAGACGACATAAGGTTTGTGAGTATCATGCCAAGGCTCCTTCCGTACACATTTCTGGCTTCCAACAAAGGTTTTGCCAGCAATGTAGCAGGTTCCATGAGCTATCAGAATTTGATGACTCAAAGAGGAGTTGTAGACGGCGTTTGGCGGGGCATAACGAGAGGCGTCGCAAAAATGCAACTGATTAG 489 0.5174 MDTHQHTAASLVRSEGKRGLSDEESEEEEYSSEALALEGYGGGEEYGGRRKRVMTDLYSSSNSKRGGSRAGGGSSGAAASMAPSCQVDGCDSDLSEAKQYHRRHKVCEYHAKAPSVHISGFQQRFCQQCSRFHELSEFDDSKRSCRRRLAGHNERRRKNATD* 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev03g0113 162 Pfam SBP domain 85 158 IPR004333 GO:0003677
Aev03g0113 162 MobiDBLite consensus disorder prediction 1 89 - -
Aev03g0113 162 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 43 160 IPR044817 GO:0003677
Aev03g0113 162 MobiDBLite consensus disorder prediction 55 69 - -
Aev03g0113 162 ProSiteProfiles Zinc finger SBP-type profile. 82 159 IPR004333 GO:0003677
Aev03g0113 162 SUPERFAMILY SBT domain 83 161 IPR036893 GO:0003677|GO:0005634
Aev03g0113 162 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 3 43 160 - -
Aev03g0113 162 MobiDBLite consensus disorder prediction 141 162 - -
Aev03g0113 162 Gene3D - 76 146 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev03g0113 Aev-Chr3 1032877 1035177 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev03g0113 76 162 SBP-box Gene Family AT2G33810 72.414 2.78e-44 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Aev03g0113 SBP 4e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev03g0113 - - aip:107631217 178.333
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev03g0113 03 1032877 1035177 Aev03g0113 03 1032877 1035177 ECH
Aev04g0558 04 3467123 3469476 Aev03g0113 03 1032877 1035177 ECH
Aev10g1349 10 16985123 16986145 Aev03g0113 03 1032877 1035177 ECH
Aev03g0113 03 1032877 1035177 Aev04g0558 04 3467123 3469476 PCT