Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev03g0089 ATGGCCTTTGATCACTACTACTCCTCGAAGGAATGGAAAACAACCGTGCCAGATGCTGCGACGGAGACAGAAAATTCCCAAGGTTATTTCGATTGCAACATCTGCTTAGACTTTGCACATGAACCAGTGGTCACTCTCTGTGGCCACTTGTATTGCTGGCCCTGCATCTACAAGTGGCTCCATGTCCAGAGTGCTTCTCTCGCGTCTGATGAGCACCCACAATGCCCTGTCTGCAAGGCTAATATATCTCATACCACAATGGTTCCCCTCTATGGCCGTGGTAATGGTTATTGTGAAGGGAAGCCATCCCGCCGAGACATTCTTGTGCCGCCAAGACCAGCTGCTTCCGGTGCTCAGTCTCTTCTGGCAACATCACCTCAGAGCGTTCAGCAGCTTCCTTATCGCAATCCTTATCAGGGTCATCAACACTTCAACCTCTCTCAAGAGGAGGATGGCACATCACAAGTGCTCAATCTTGGTGCCTCCATGACACCAGGTTTCCCTCACCCAATGGCAACACCGGATCCATTTTCCATTGCAAACTGCAACTGCGAAGCTAAGATCTGGTTTGAAAAACAAAAAAAAAGAAGCGAAAAAGAAGAAGACGAAGAAATGTCGTCTTGGTACGGTCATGAAAGCATACGCAATGGCCAGATTGCCCTCAATTCCATCCAACGTAGATGTGTTAAAATATCTGCTGCTGAATCCATACCTGTCACCAAATTTGTTCCTCCTGAAAATTTCAACCTAGCATTGCTAAGCTTGGAACTGGACTTCATTAAAAAGGGAAGTAAGAGTGAACAGATTGATGCTGTTCTACTGGCTAAGCAACTTAGGAAGAGATTTTCAAACCAGGTTATGACGGCAGGGCAGAAAGTGTTATTTGAGTATCATGGAAATAACTATAGCTTTACAGTCACTCAAGCTACTGTTGAGGGCCAAGAGAAGTCTACTATTGAGAGAGGAATGATTTCGGATGATACGTACATTGTTTTTGAAACATCGCGTGATAGTGGAATTAAGGTTGTTAATCAGCGTGAGGCTGCCACTAGTAACATTTTTAAACAGAAAGAGTTCAATCTTCAGTCTCTGGGTATTGGGGGCCTGAGTGCAGAGTTTGCAGACATATTTAGAAGAGCCTTTGCCTCACGTGTTTTCCCTCCCCATGTGACATCTAAATTAGGGATCAAGCATGTGAAGGGCATGTTGCTTTACGGACCTCCTGGTACTGGAAAAACCCTTATGGCACGTCAAATTGGAAAAATTTTGAATGGGAAGGAACCAAAGATTGTAAATGGTCCTGAAGTTTTGAGCAAATTTGTTGGTGAAACTGAAAAGAATGTTAGAGACCTTTTTGCTGATGCAGAACAGGAGCAGAGGACCCGAGGGGATGAAAGTGATTTGCATGTTATAATCTTTGATGAAATTGATGCTATTTGTAAGTCTAGAGGTTCAACTCGTGATGGTACCGGAGTTCATGATAGTATTGTGAACCAGCTTCTTACCAAGATAGATGGTGTGGAGTCACTAAATAATGTTTTGCTTATTGGAATGACTAACAGAAAGGATATGCTTGATGAGGCTCTCTTAAGACCAGGGCGATTGGAAGTCCAGGTTGAGATAAGCCTTCCTGATGAAAATGGTCGATTGCAAATTCTTCAAATTCATACTAACAAGATGAAAGAGAATTCTTTTCTTGCTGCTGATGTGAACCTTCAAGAGCTTGCTGCTCGAACCAAAAACTATAGTGGTGCAGAACTTGAAGGTGTTGTAAAAAGTGCTGTCTCATATGCTTTAAATCGACAACTGAGTCTAGATGATCTCACTAAGCCAGTGGAGGAAGAGAATATTAAGGTTACAATGGACGACTTTTTGAATGCACTCCAAGAAGTTACTCCTGCATTTGGAGCTTCCACTGACGACCTTGAAAGATGCAGACTACATGGAATGGTGGACTGTGGTGATCGACATAAGCACATTTATCAAAGAGCAATGCTACTTGTGGAGCAAGTTAAAGTTAGTAAAGGAAGCCCTCTTGTTACTTGTCTTCTGGAAGGTCCCAGTGGCAGTGGTAAAACTGCACTTGCAGCTACCGTAGGTATTGACAGTGACTTCCCATATGTCAAGATAGTTTCAGGTGAATCGATGATTGGTCTACATGAGAGCACAAAATGTGCACAGATTATTAAGGTTTTTGAGGATGCATACAAGTCACCATTGAGTGTCATTATCCTTGATGACATTGAGAGGTTGTTGGAGTATATTGCCATTGGCCCACGGTTTTCAAACACTATTGCTCAGACACTATTGGTCTTGCTCAAACGGCTTCCTCCAAAGGGGAAAAAACTCATGGTTATCGGTACAACAAGTGAACTGGGTTTCTTGGACTCAATTGGATTTTGTGATACTTTCTCTGTCACTTACCATGTTCCTACCTTAAACACAAACGATGCAAAGAAGGTCCTAGAACAGTTGAATGTTTTTGCTGATGACGATACTGATACTGCTGCTGAGGCATTGAATGATATGCCAATTAGGAAGCTGTACATGTTGATTGAGATGGCAGCACAAGGGCAGCAAGGTGGATCTGCTGAAGCTATCTATTCTGGCAAAGAGAAGATCAATATCGCCCATTTCTTTGATTGCCTCCAAGATGTTGTTAGGATATAA 2670 0.4288 MAFDHYYSSKEWKTTVPDAATETENSQGYFDCNICLDFAHEPVVTLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKANISHTTMVPLYGRGNGYCEGKPSRRDILVPPRPAASGAQSLLATSPQSVQQLPYRNPYQGHQHFNLSQEEDGTSQVLNLGASMTPGFPHPMATPDPFSIANCNCEAKIWFEKQKKRSEKEEDEEMSSWYGHESIRNGQIALNSIQRRCVKISAAESIPVTKFVPPENFNLALLSLELDFIKKGSKSEQIDAVLLAKQLRKRFSNQVMTAGQKVLFEYHGNNYSFTVTQATVEGQEKSTIERGMISDDTYIVFETSRDSGIKVVNQREAATSNIFKQKEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKILNGKEPKIVNGPEVLSKFVGETEKNVRDLFADAEQEQRTRGDESDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAADVNLQELAARTKNYSGAELEGVVKSAVSYALNRQLSLDDLTKPVEEENIKVTMDDFLNALQEVTPAFGASTDDLERCRLHGMVDCGDRHKHIYQRAMLLVEQVKVSKGSPLVTCLLEGPSGSGKTALAATVGIDSDFPYVKIVSGESMIGLHESTKCAQIIKVFEDAYKSPLSVIILDDIERLLEYIAIGPRFSNTIAQTLLVLLKRLPPKGKKLMVIGTTSELGFLDSIGFCDTFSVTYHVPTLNTNDAKKVLEQLNVFADDDTDTAAEALNDMPIRKLYMLIEMAAQGQQGGSAEAIYSGKEKINIAHFFDCLQDVVRI* 890
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev03g0089 889 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 377 641 IPR027417 -
Aev03g0089 889 Pfam Cell division protein 48 (CDC48), domain 2 268 330 IPR004201 -
Aev03g0089 889 SMART AAA_5 678 816 IPR003593 -
Aev03g0089 889 SMART AAA_5 398 545 IPR003593 -
Aev03g0089 889 CDD RING-HC_AtRMA_like 30 80 - -
Aev03g0089 889 SUPERFAMILY Cdc48 domain 2-like 245 347 IPR029067 -
Aev03g0089 889 CDD AAA 672 790 - -
Aev03g0089 889 Pfam Zinc finger, C3HC4 type (RING finger) 32 78 IPR018957 GO:0046872
Aev03g0089 889 SMART ring_2 32 78 IPR001841 -
Aev03g0089 889 SUPERFAMILY RING/U-box 27 91 - -
Aev03g0089 889 Pfam ATPase family associated with various cellular activities (AAA) 402 542 IPR003959 GO:0005524|GO:0016887
Aev03g0089 889 Pfam ATPase family associated with various cellular activities (AAA) 683 796 IPR003959 GO:0005524|GO:0016887
Aev03g0089 889 Pfam AAA+ lid domain 569 624 IPR041569 -
Aev03g0089 889 PANTHER VESICULAR-FUSION PROTEIN NSF 213 888 IPR039812 GO:0016887|GO:0035494
Aev03g0089 889 ProSiteProfiles Zinc finger RING-type profile. 32 79 IPR001841 -
Aev03g0089 889 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 642 859 IPR027417 -
Aev03g0089 889 Gene3D - 245 342 - -
Aev03g0089 889 CDD AAA 400 543 - -
Aev03g0089 889 ProSitePatterns AAA-protein family signature. 513 531 IPR003960 GO:0005524|GO:0016887
Aev03g0089 889 ProSitePatterns Zinc finger RING-type signature. 47 56 IPR017907 -
Aev03g0089 889 Gene3D - 640 811 IPR027417 -
Aev03g0089 889 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 7 105 IPR013083 -
Aev03g0089 889 Gene3D - 351 544 IPR027417 -
Aev03g0089 889 Gene3D - 545 636 - -
Aev03g0089 889 PANTHER BNAA03G50350D PROTEIN 213 888 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev03g0089 Aev-Chr3 862444 872348 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev03g0089 366 617 Calmodulin-binding Proteins AT3G56690 33.071 3.50e-30 126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev03g0089 K06027 - gmx:100779259 1217.6