Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev03g0088 ATGGCTGATAGTAATAATTATGTGTTGGAGTTGAATCTTGGTGTAGGGAAGATTGGTCAGACACCAATTAGGCCAAGGTGCCCTGCACCATTTCTGTTGAAGACTTATGATTTGGTTGAAGAAGGTGGTGTGGTAGTAGTGGATATTAATGGTGAAGCTTATCATGATCATGATCAAGATCAAGATCAAGATCATAGCAGAATTAGCAAGAAGAAGAATAGTAGTATTGTGTCATGGAATGCAGATGGAACTGGTTTTGTTGTGTGGTCTCCTGCAGAATTCTCAGAGCTCACCTTGCCTAGATATTTCAAGCACAACAACTTCTCTAGCTTCATTCGCCAATTGAATACCTATGGATTCAAGAAAACATCATCAAAAAGATGGGAATTCAAGCATGAAAAGTTTCAGAGGGGTTGTAGGCACATGCTAGTTGAGATCACAAGGAAAAAGTGTGAGCCAAGCGTGTTCCCTTCATACCTCAAATCTTCTTCAGAGGAAAATGCAGCAATGGTGACTTCACCATCAATGGAGGATAACATTAGTAGTAGTAGTAGTAGTCATCAACTACTTATGGAGGAGAACAAGATCCTCAAGAAAGAGAGGTTGGAGCTTCAAATGCAGATTGCAGAGTTGAAAGCACTTGAAATGAAGTTGTTGGATTGTCTGTCTCAGTTTGTGGACACTCACCAAAATAATATTAGAAGACAATGTTAA 714 0.395 MADSNNYVLELNLGVGKIGQTPIRPRCPAPFLLKTYDLVEEGGVVVVDINGEAYHDHDQDQDQDHSRISKKKNSSIVSWNADGTGFVVWSPAEFSELTLPRYFKHNNFSSFIRQLNTYGFKKTSSKRWEFKHEKFQRGCRHMLVEITRKKCEPSVFPSYLKSSSEENAAMVTSPSMEDNISSSSSSHQLLMEENKILKKERLELQMQIAELKALEMKLLDCLSQFVDTHQNNIRRQC* 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev03g0088 237 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 25 235 IPR027725 -
Aev03g0088 237 Coils Coil 187 219 - -
Aev03g0088 237 Pfam HSF-type DNA-binding 68 149 IPR000232 GO:0003700|GO:0006355|GO:0043565
Aev03g0088 237 SUPERFAMILY "Winged helix" DNA-binding domain 70 149 IPR036390 -
Aev03g0088 237 PRINTS Heat shock factor (HSF) domain signature 111 123 IPR000232 GO:0003700|GO:0006355|GO:0043565
Aev03g0088 237 PRINTS Heat shock factor (HSF) domain signature 60 83 IPR000232 GO:0003700|GO:0006355|GO:0043565
Aev03g0088 237 PRINTS Heat shock factor (HSF) domain signature 98 110 IPR000232 GO:0003700|GO:0006355|GO:0043565
Aev03g0088 237 Gene3D - 25 150 IPR036388 -
Aev03g0088 237 PANTHER HEAT STRESS TRANSCRIPTION FACTOR B-2A-LIKE 25 235 - -
Aev03g0088 237 SMART hsfneu3 27 149 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev03g0088 Aev-Chr3 857105 859217 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev03g0088 19 229 HSF AT5G62020 34.483 1.88e-39 136
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Aev03g0088 HSF_DNA-bind 5.5e-28 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev03g0088 K09419 - gmx:100789792 297.745
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev03g0088 03 857105 859217 Aev03g0088 03 857105 859217 ECH