Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev03g0053 ATGGCGGGGGATGACGTGGACTTTTCTAGATTGTTCTCTGGTGATGACGACGACGAAAACATGTGTTATATAGATATGCAGACTATTTTGGATGTGCTTGATGAGGATTCCGATGCTGTGGAGAGTACTCTCTATGATTTTGCATTAAAAAATGTTTCACATGGTGAATCTGGCATCCATGATACTATTCAGCCTCAAAATGCGTCTCCTGTGTTTGAAGAACCACCTATTTCTAGGTTGGAGGCGGATCCAGTCACAGACTGTTCTCCATTCTGCTCAGTTTGCATTGCAGAAAATTCTATGCTTGACTATGAAAATGAAAATAAGGGATTTCCATTTCAGGCTTCCTCCTCCCCGTATGTTTTCCCTGGTAGTTATATCAAGTCATTCTCTCCAGGTGAAAGCAATGAGATTTGCTGTACAGAAAGGACGGGAGTTTCGAAACATGAGATAGCTGCTTATGGTGTGGAAGCAAGTTTCCCTGAGGCACATTCAAACAATATGTCAGTTTGGGGAGAGAATTCGAGTCTGAGTATATGGAAGAGTGAAAATGAGAGGCAATTCAAGCATGCGGGAGGGGATGTTGAATCTGAACATGCTTCACACAGTTCTACCATTGAGAATGGTGATGTGTGTTTTGAAGATTTTGTTGAAGAAACTGTTGGAGGGGTTTCTGGGCAGCAGGAAAGTGACTTGTGTACATCTTTTCAAATGTCAGATGTTGAAGTTGATAGATCTTTGCAAGTTGCAACTTCAACTGATTCTACACTTCATCAAGGTCCTCAAGTTCAAAGTGGTTTTAGTGACTACTATCTATCTTCCAGTAGTTACCAGGGAACAGATGATAGACCCTTTGTCCATGACCTATCTCTGGGGTTTTTGCCTGATGGTATTTGTTCTCAGTTATGGACAAATGACGAAATGACGAGTAACATGAAGGCTGCAAATGTGGGGTTTTATACTGATATAGCACCTATGAATAGTGGTATGCACTTAGTTGGTACTGGGGGAATATCTATTCAAGATAATCAATTTATGTTTCCAGATAGTGGCTATCCATCATTTTTTTCTGATAATGTTACCTTTAAAGACAAGGCATCAGTGCCGCTTCCGACTCATGCGTCATATATATCAAATCGTGGGCAATCACTTTGTGTAAAATCTGAAAGAGATGAACTGATCACACCTTACCAAAATAATTTTCACAACAATGATGCTGAGTTTAGTATAGGTCAAGACACGAAACAATTATCTGGTGTTTTTTCTTCTGTGGAATGTCAGAGTTATAATGGATATTTTACATCTGAGAATCATTATCGAGATATCATTGACATAGCCAATCATTATCAGGATATCATTGATGGACCTGCCAGTAAACTTCAAGGAGATGTGAGCAATTTGAATTTAAAAGCTGTAGGCAAATCTTTGCTCTGTGCTCCTGCATCCATTGTTGGTGAGAAGCAGTTTGGCTATGATAAGAGACATGGAGGGCGCAAAATGATTCAATATAACTGCATTGATTCTAAAACTTCAAAAGGCAGCGCTGAGACTTTCCAAGTTGAGGATGACCCAGATGTTTGCATTATTGAAGACTTCAGTCTTCCTGCACCTACAAATCAAAATGCAGATATTGGTAATTCATTCCGTATATCACAGTCTTCCAGATGTGTTCATTCGCAACCTTACATGGTTGGAAGCACAAGGCAGAAGGCATGTGATGAGCAAAATATATTGCAAGTTGCATTGCAGGATCTATCTCAGCCTAACTCAGAAGTTAGTCCACCAGATGGATTGTTGGCAGTACCTCTTTTAAGACATCAGAGAATTGCTTTATCATGGATGGTTCAGAAGGAAACATCAAGTTTATATTGCTCAGGTGGAATCCTTGCAGATGATCAGGGACTTGGAAAAACAGTGTCAACTATTGCTTTAATATTAAAGGAAAGAGCTCCAATATTTTCTGCATGCCCCAATGCCCAAAAAGGTGAATTGAAAATTTTGAATCTTCACGTGGAGGATGACATGCTTCCTCAGAATGGTCTAGTGAAGAAAGAATCTGAGACATGTGGAGATATGTCAATCAGAAACCCAGTAGAGAGCAAGAGTTTGACGATGCAAGCCAATGAAAGGCCATCTGCAGGAACCCTTATTGTTTGCCCCACTAGTGTCTTGCGTCAGTGGGCTGAAGAGTTGCACAATAAGGTAACCAGCCTAGCAAACCTCTCTGTGCTAGTGTACCATGGAAGCAACCGAACGAAAGATCCTCATGAGGTGGCCAAATATGATGTTGTTCTGACAACTTATTCTATTGTCAGCATGGAGGTCCCTAAGCAGCCTCTAGTTAACAAAGATGATGACGTAAAGGGAACTTTTGAAGATCCTGATGTACCAAGTAGGAAGCGTAAAGGCCCTTCTAATTCGCGGAAAAGTGCCAAGAAACAATTGGACAGCACAATGCTTGAGGCTATTGCCCGGCCTCTTGCAAAGGTGTCATGGTTTAGGGTTGTCCTGGATGAGGCCCAGAGTATAAAAAATCATCGAACTCAAGTTGCAAGGGCCTGTTCGGGTCTTCATGCTAAGCGTAGATGGTGCTTGTCAGGGACACCCATCCAGAATGCAATTGATGATCTCTACAGTTACTTTAGATTTCTAAAATATGCCCCTTATGACATCTATCAATCGTTCTGTTCTATGATTAAGTTTCCGATCAGCAGAAATCCAACACAAGGCTACAGAAAGATACAAGCTGTCCTAAAGACAATAATGTTACGGAGGACCAAAGGCACACTCCTAGATGGAGAACCAATTATTTGCTTGCCGCCAAAATTTGTTGAGCTGAAAAAAATTGATTTTTCAAGGGAGGAACGTGATTTCTATTCCAGATTAGAGGCTGATTCACGTGCACAGTTTCAGGAATATGCTGATGCTGGAACCGTGAAAGAAAACTATGTGAACATTTTGCTGATGCTTCTCCGCCTTAGACAAGCTTGTGATCACCCTGTGCTCGTCAAGCATTACAATTCTAACTCTCTATGGAGATTTTCAGTTGAGACAGCAAAGAAGCTTCCCCAGGACAAACAAGTGTCTCTTCTCAAGTGTCTGGAGGCTTCCTTTGCCCTGTGTGAAATCTGTAATGATCCTCCTGAAGATGCTGTTGTTTCAATCTGTGGTCACGTTTTCTGTAGCCAGTGCATTTCTGAACATCTTACTGGTGATGACAATCAGTGCCCTGATACAAAATGCAAAACTCTACTGAGCACGTCTTCTGTGTTTCCAAAAGCCACATTGAACAGTTGTCTTTCTAACCACAGTAGTGATGGTTCGTCTGGTTGCTCCAGTTCTGAAGCAGACGCGTTCGAGCTTTGGTCGCAGAGTCGGCCCTGCGATTCTTCTAAAATTAAAGCTGCACTTGAGGTGTTGAAGTCAGTTTGTAAGGTACACTGCAATACTTCAGAACATATTTATGCACATAGAACTTTTGTAGAAAATGGTGACTGCCCTGGGATCTCCTTTGATGTTAACAATGGGAACTCCTCTAAGGATTCTCCTGAATGTCAAAATTTGTCTCGGAATAGAAGCTCTAATGGTGTAGGAGAGAAAGCGATAGTGTTCTCTCAGTGGACCCAGATGTTAGATTTGATTGAAGTGTGTCTTAAGAATTCTTCAATTCAGTATAGACGCCTTGATGGAACTATGTCTGTCATTGCAAGAGATAAAGCTGTTAAAGACTTTAACACTCTCCCTGAGGTGTCAGTTATGATAATGTCTTTGAAGGCTGCCAGTCTTGGTCTAAACATGGTGGCAGCCTGCCATGTTCTTATGCTAGATTTATGGTGGAATCCTACAACGGAAGATCAAGCAATAGATAGAGCACATCGAATTGGGCAGACCCGTCCTGTAACTGTTGTGCGTTTAACTGTGAGAGATACAGTTGAAGATCGTATTTTAGCTCTGCAGCAAAAGAAGCGAGAGATGGTTGCATCTGCATTTGGGGAGGATGGAAGTGGTGGTAGTCAAAGTCGCCTTACAGTTGCTGATTTAAAATACTTGTTCATGATGTGA 4062 0.4146 MAGDDVDFSRLFSGDDDDENMCYIDMQTILDVLDEDSDAVESTLYDFALKNVSHGESGIHDTIQPQNASPVFEEPPISRLEADPVTDCSPFCSVCIAENSMLDYENENKGFPFQASSSPYVFPGSYIKSFSPGESNEICCTERTGVSKHEIAAYGVEASFPEAHSNNMSVWGENSSLSIWKSENERQFKHAGGDVESEHASHSSTIENGDVCFEDFVEETVGGVSGQQESDLCTSFQMSDVEVDRSLQVATSTDSTLHQGPQVQSGFSDYYLSSSSYQGTDDRPFVHDLSLGFLPDGICSQLWTNDEMTSNMKAANVGFYTDIAPMNSGMHLVGTGGISIQDNQFMFPDSGYPSFFSDNVTFKDKASVPLPTHASYISNRGQSLCVKSERDELITPYQNNFHNNDAEFSIGQDTKQLSGVFSSVECQSYNGYFTSENHYRDIIDIANHYQDIIDGPASKLQGDVSNLNLKAVGKSLLCAPASIVGEKQFGYDKRHGGRKMIQYNCIDSKTSKGSAETFQVEDDPDVCIIEDFSLPAPTNQNADIGNSFRISQSSRCVHSQPYMVGSTRQKACDEQNILQVALQDLSQPNSEVSPPDGLLAVPLLRHQRIALSWMVQKETSSLYCSGGILADDQGLGKTVSTIALILKERAPIFSACPNAQKGELKILNLHVEDDMLPQNGLVKKESETCGDMSIRNPVESKSLTMQANERPSAGTLIVCPTSVLRQWAEELHNKVTSLANLSVLVYHGSNRTKDPHEVAKYDVVLTTYSIVSMEVPKQPLVNKDDDVKGTFEDPDVPSRKRKGPSNSRKSAKKQLDSTMLEAIARPLAKVSWFRVVLDEAQSIKNHRTQVARACSGLHAKRRWCLSGTPIQNAIDDLYSYFRFLKYAPYDIYQSFCSMIKFPISRNPTQGYRKIQAVLKTIMLRRTKGTLLDGEPIICLPPKFVELKKIDFSREERDFYSRLEADSRAQFQEYADAGTVKENYVNILLMLLRLRQACDHPVLVKHYNSNSLWRFSVETAKKLPQDKQVSLLKCLEASFALCEICNDPPEDAVVSICGHVFCSQCISEHLTGDDNQCPDTKCKTLLSTSSVFPKATLNSCLSNHSSDGSSGCSSSEADAFELWSQSRPCDSSKIKAALEVLKSVCKVHCNTSEHIYAHRTFVENGDCPGISFDVNNGNSSKDSPECQNLSRNRSSNGVGEKAIVFSQWTQMLDLIEVCLKNSSIQYRRLDGTMSVIARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLMLDLWWNPTTEDQAIDRAHRIGQTRPVTVVRLTVRDTVEDRILALQQKKREMVASAFGEDGSGGSQSRLTVADLKYLFMM* 1354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev03g0053 1353 ProSitePatterns Zinc finger RING-type signature. 1056 1065 IPR017907 -
Aev03g0053 1353 Gene3D - 569 665 IPR038718 -
Aev03g0053 1353 Pfam Helicase conserved C-terminal domain 1193 1295 IPR001650 -
Aev03g0053 1353 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 537 1352 - -
Aev03g0053 1353 SMART ultradead3 599 904 IPR014001 -
Aev03g0053 1353 CDD DEXDc_SHPRH-like 603 925 - -
Aev03g0053 1353 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1034 1091 IPR013083 -
Aev03g0053 1353 ProSiteProfiles Zinc finger RING-type profile. 1041 1080 IPR001841 -
Aev03g0053 1353 SUPERFAMILY RING/U-box 1038 1099 - -
Aev03g0053 1353 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1189 1348 IPR001650 -
Aev03g0053 1353 SMART helicmild6 1212 1295 IPR001650 -
Aev03g0053 1353 SMART ring_2 1041 1079 IPR001841 -
Aev03g0053 1353 Pfam SNF2-related domain 623 1002 IPR000330 GO:0005524|GO:0140658
Aev03g0053 1353 Gene3D - 940 1352 IPR027417 -
Aev03g0053 1353 PANTHER HELICASE-LIKE TRANSCRIPTION FACTOR CHR28 537 1352 - -
Aev03g0053 1353 Gene3D - 694 787 IPR038718 -
Aev03g0053 1353 CDD SF2_C_SNF 1198 1305 - -
Aev03g0053 1353 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 933 1352 IPR027417 -
Aev03g0053 1353 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 618 887 IPR014001 -
Aev03g0053 1353 Pfam Zinc finger, C3HC4 type (RING finger) 1041 1077 IPR018957 GO:0046872
Aev03g0053 1353 MobiDBLite consensus disorder prediction 781 802 - -
Aev03g0053 1353 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 588 925 IPR027417 -
Aev03g0053 1353 MobiDBLite consensus disorder prediction 781 814 - -
Aev03g0053 1353 Gene3D - 790 936 IPR038718 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev03g0053 Aev-Chr3 636258 644479 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev03g0053 491 1352 RAD5 or RAD16-like Gene Family AT1G61140 59.226 0.0 942
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Aev03g0053 SNF2_N 1.1e-66 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev03g0053 - - gmx:100802436 1737.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev03g0053 03 636258 644479 Aev03g0053 03 636258 644479 ECH
Aev03g0053 03 636258 644479 Aev04g0623 04 3878384 3886329 PCT