Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev03g0023 ATGGCTAGGCAATTTGTGAGCATTGATGGGGTGGGAGAGACTACAACACATGCTACAAAGTGTGTTTTTCACCTCAGGACCACAGTTAGTCCTATAGACAGACCTTCAATCCCTTTAGATGGTATTTCACCAACTGCTTTCAAGGACATCCTCAATGACACATTGAATGCTGATTATCTCATAGATGTTGTGGGGCTTTTGACTGGGATGAGTCAGCCTAAAGATTATGATAGAGATGGAAAGTCAGGAAAAATGGTGGTAATAGAGCTCACAGCTGAAAATGAGAAACTTGAGTGCGCCCTTTTTGGTGAGTATGTTGATCAGATGTGCTCTTTGGTTCGTGCCACACCTTTGGATTTGCCTATTGTTGTTTTGCAGCTGGTCAAGCTCAAAAGTTTTAGAGGCAATGTTGGATTACAAAATGTAATGTGGGCAACCAAGATTATGCTTAATCCAAATCTTGAAGCAGCTGTTAAGTTTAAAGATAGTATCTCAACTGAAGGTTTGCCCCTGCTCATATCTGGGACATTTGTTGTTTTGGGGACCGTTAATGCTATTGCTGAGGATGGTCCATGGTGGTACCCTGCATGCCGCTGTGGAAGGGCTGTTGTACCAGATTCTGGTATTTACTTATGTGATTTTTGTGACACACATGTGTTTACTGTGTCCCAAGAGGTTGAAGACTCTACTGGTACTGCTATTTTTGTGCTATTTGAAAAGGAGTGTATGACATTGTTCAAGAAAACATGTGCTGAAGTTTTTGTTGAACATATGAAAAATCCAGAGAATGTTAGGAACAATGTGTATCCTTTAATGCTGAATGACTTGTGTGGGAAAAAAATGCTATTTAAGATTGAAACAAAGGTTATTTCTCCAAATAGATATAATGGAACCTTCTGTGTTAAAAGAGTTTGTGATGACAGTGCTATTGTGTCAATGTTTTGTTTGGATGGGGCTGATCAAACACCAATGAAGGCTACATTTACACCTTATTTCACTGATTCAATGGGGTTGGAGGACATTTGTCCTGAAATGTGCACAACAGTTGGAAAACAAATGATTCGTAAGACTGGTGTCAGTATTATTGCTGATGAGGACAGTGAAGTTGTCCCTAATACTGTGTTGGCCCCTATTGGGCTTCATTGGATAATGATGACTACAACACATGCTACAAAGTGTGTTTTTCACCTCAGGACCACAGTTAGTCCTATAGACAGACCTTCAATCCCTTTAGATGGTATTTCACCAACTGCTTTCAAGGACATCCTCAATGACACATTGAATGCTGATTATCTCATAGATGTTGTGGGGCTTTTGACTGGGATGAGTCAGCCTAAAGATTATGATAGAGATGGAAAGTCAGGAAAAATGGTGATGTGCTCTTTGGTTCGTGCCACACCTTTGGATTTGCCTATTGTTGTTTTGCAGCTGGTCAAGCTCAAAAGTTTTAGAGGCAATGTTGGATTACAAAATGTAATGTGGGCAACCAAGATTATGCTTAATCCAAATCTTGAAGCAGCTGTTAAGTTTAAAGATAGTATCTCAACTGAAGGTTTGCCCCCTGCTCATAGTATAAATATTTATGTTGAACCTCCAAAAGTGTCTTTGGAGGATGATTTTATGAAGAATAACCCAAAGGCAACTATTGATTTCCTAAGTGCCAATGAACAATCTGGGACATTTGTTGTTTTGGGGACCGTTAATGCTATTGCTGAGGATGGTCCATGGTGGTACCCTGCATGCCGCTGTGGAAGGGCTGTTGTACCAGATTCTGGTATTTACTTATGTGATTTTTGTGACACACATGTGTTTACTGTGTCCCCAAGGTTTAAATTAATGATAGAGGTTGAAGACTCTACTGGTACTGCTATTTTTGTGCTATTTGAAAAGGAGTGTATGACATTGTTCAAGAAAACATGTGCTGAAGTTTTTGTTGAACATATGAAAAATCCAGAGAATGTTAGGAACAATGTGTATCCTTTAATGCTGAATGACTTGTGTGGGAAAAAAATGCTATTTAAGATTGAAACAAAGGTTATTTCTCCAAATAGATATAATGGAACCTTCTGTGTTAAAAGAGTTTGTGATGACAGTGCTATTGTGTCAATGTTTTGTTTGGATGGGGCTGATCAAACACCAATGAAGGCTACATTTACACCTTATTTCACTGATTCAATGGGGTTGGAGGACATTTGTCCTGAAATGTGCACAACAGTTGGAAAACAAATGATTCGTAAGACTGGTGTCAGTATTATTGCTGATGAGGACAGTGAAGTTGTCCCTAATACTGTGTTGGCCCCTATTGGGCCTTCATTGGATAATGATAAATCTGGCTTAATTCGTTCTGGGACTGTTACTCCCGCAAAGCGCAATTTGGAGGCAGAATTTAACAAGGTTGATGTTGGGAGTTCTAGAGCTGACAAGATGAAATCAATCAAAGTGAGGAGTAACTGTAGTTATTATTAG 2466 0.3933 MARQFVSIDGVGETTTHATKCVFHLRTTVSPIDRPSIPLDGISPTAFKDILNDTLNADYLIDVVGLLTGMSQPKDYDRDGKSGKMVVIELTAENEKLECALFGEYVDQMCSLVRATPLDLPIVVLQLVKLKSFRGNVGLQNVMWATKIMLNPNLEAAVKFKDSISTEGLPLLISGTFVVLGTVNAIAEDGPWWYPACRCGRAVVPDSGIYLCDFCDTHVFTVSQEVEDSTGTAIFVLFEKECMTLFKKTCAEVFVEHMKNPENVRNNVYPLMLNDLCGKKMLFKIETKVISPNRYNGTFCVKRVCDDSAIVSMFCLDGADQTPMKATFTPYFTDSMGLEDICPEMCTTVGKQMIRKTGVSIIADEDSEVVPNTVLAPIGLHWIMMTTTHATKCVFHLRTTVSPIDRPSIPLDGISPTAFKDILNDTLNADYLIDVVGLLTGMSQPKDYDRDGKSGKMVMCSLVRATPLDLPIVVLQLVKLKSFRGNVGLQNVMWATKIMLNPNLEAAVKFKDSISTEGLPPAHSINIYVEPPKVSLEDDFMKNNPKATIDFLSANEQSGTFVVLGTVNAIAEDGPWWYPACRCGRAVVPDSGIYLCDFCDTHVFTVSPRFKLMIEVEDSTGTAIFVLFEKECMTLFKKTCAEVFVEHMKNPENVRNNVYPLMLNDLCGKKMLFKIETKVISPNRYNGTFCVKRVCDDSAIVSMFCLDGADQTPMKATFTPYFTDSMGLEDICPEMCTTVGKQMIRKTGVSIIADEDSEVVPNTVLAPIGPSLDNDKSGLIRSGTVTPAKRNLEAEFNKVDVGSSRADKMKSIKVRSNCSYY* 822
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev03g0023 821 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 20 254 - -
Aev03g0023 821 CDD RPA1_DBD_C 177 289 IPR013955 -
Aev03g0023 821 SUPERFAMILY Nucleic acid-binding proteins 416 520 IPR012340 -
Aev03g0023 821 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 391 644 - -
Aev03g0023 821 Gene3D - 408 520 IPR012340 -
Aev03g0023 821 Gene3D - 36 165 IPR012340 -
Aev03g0023 821 SUPERFAMILY Nucleic acid-binding proteins 44 170 IPR012340 -
Aev03g0023 821 CDD RPA1_DBD_C 552 679 IPR013955 -
Aev03g0023 821 SUPERFAMILY Nucleic acid-binding proteins 553 687 IPR012340 -
Aev03g0023 821 Gene3D - 166 311 IPR012340 -
Aev03g0023 821 Gene3D - 539 701 IPR012340 -
Aev03g0023 821 SUPERFAMILY Nucleic acid-binding proteins 176 297 IPR012340 -
Aev03g0023 821 CDD RPA1_DBD_B_like 62 163 - -
Aev03g0023 821 Pfam Replication factor-A C terminal domain 177 289 IPR013955 -
Aev03g0023 821 Pfam Replication factor-A C terminal domain 561 679 IPR013955 -
Aev03g0023 821 PANTHER REPLICATION FACTOR A 1, RFA1 391 644 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Aev03g0023 821 PANTHER REPLICATION FACTOR A 1, RFA1 20 254 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev03g0023 Aev-Chr3 306585 317488 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev03g0023 421 686 Core DNA Replication Machinery Family AT5G08020 23.026 1.43e-06 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev03g0023 - - ahf:112791275 296.589