Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev02g2299 ATGTCTACCTCTGCAGCTTCTCTTGCACTTCCAACCTTATCGCTCCGAACCCGACAACCCCTTTCTTCACCACCACAATGCTTCTCTTCGCTCTCTTTCCTCAACCCCAATGCTAAAGTAACCACCACTATTTCCGCTACTTTCCTCCGTCGTCCAACTTTGTTGTCGTCGAGGTTTGTTTCCAATGTTGCTCTGTCCTCGGAGTTCGACCAGGACGAGGAGATTCTCAGCGATGAGGAGGAGCGTAGCTTCTCCCCAGACCTCAAGCTCTTCGTTGGGAACCTTCCTTTCAGTGTTGACAGTGCTCAGCTCGCTGAGCTCTTCGAAAGTGCTGGAACAGTTGAAGTGGTTGAGGTGATTTATGACAAGACAACTGGAAGAAGCAGGGGGTTTGGTTTTGTGACCATGTCTTCCGCTGAGGAAGCAGAGGCAGCTACTCAACAATTCAATGGCTATGAACTAGATGGAAGAGCATTGAGAGTGAATTGTGGACCACCTCCTGCTCGGAGTGAAAGTTCGCGTTTTAGATCTCCGGCCAGAGGTGGTTCTTTTTCAGATAGTGGAAACCGTGTTCATGTCGGTAATCTTGCGTGGGGTGTTGACCACTTGGCACTCGAGTCATTGTTTCGTGAACAAGGGAAGGTTTTGGAGGCAAAGGTAATCTATGACAGGGAAAGTGGAAGATCAAGAGGCTTTGGCTTTGTGACTTACAGCAGCGCTGAAGAGGTCAACAGTGCTATTGAGTCCTTAGATGGTGTGGACTTGAATGGCAGAGCTATTAGAGTTTCTTTGGCAGATTCTAAGCCCAAGCGCCAATTTTGA 822 0.4866 MSTSAASLALPTLSLRTRQPLSSPPQCFSSLSFLNPNAKVTTTISATFLRRPTLLSSRFVSNVALSSEFDQDEEILSDEEERSFSPDLKLFVGNLPFSVDSAQLAELFESAGTVEVVEVIYDKTTGRSRGFGFVTMSSAEEAEAATQQFNGYELDGRALRVNCGPPPARSESSRFRSPARGGSFSDSGNRVHVGNLAWGVDHLALESLFREQGKVLEAKVIYDRESGRSRGFGFVTYSSAEEVNSAIESLDGVDLNGRAIRVSLADSKPKRQF* 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev02g2299 273 SUPERFAMILY RNA-binding domain, RBD 185 272 IPR035979 GO:0003676
Aev02g2299 273 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 189 267 IPR000504 GO:0003723
Aev02g2299 273 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 192 261 IPR000504 GO:0003723
Aev02g2299 273 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 90 160 IPR000504 GO:0003723
Aev02g2299 273 PANTHER 29 KDA RIBONUCLEOPROTEIN, CHLOROPLASTIC 1 273 - -
Aev02g2299 273 SUPERFAMILY RNA-binding domain, RBD 84 184 IPR035979 GO:0003676
Aev02g2299 273 PANTHER OS02G0815200 PROTEIN 1 273 - -
Aev02g2299 273 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 88 166 IPR000504 GO:0003723
Aev02g2299 273 SMART rrm1_1 190 263 IPR000504 GO:0003723
Aev02g2299 273 SMART rrm1_1 89 162 IPR000504 GO:0003723
Aev02g2299 273 CDD RRM_HP0827_like 89 162 - -
Aev02g2299 273 Gene3D - 186 273 IPR012677 -
Aev02g2299 273 Gene3D - 61 185 IPR012677 -
Aev02g2299 273 MobiDBLite consensus disorder prediction 165 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev02g2299 Aev-Chr2 23874978 23876705 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev02g2299 90 272 Eukaryotic Initiation Factors Gene Family AT4G34110 33.880 2.22e-20 88.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev02g2299 - - gmx:100786275 380.563
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev02g2299 02 23874978 23876705 Aev02g2299 02 23874978 23876705 ECH
Aev06g0205 06 1580750 1582640 Aev02g2299 02 23874978 23876705 PCT