Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev02g2258 ATGCAGGTCCAAGAAGAATTGGTTGTAATCAAAGGCAAGCGCACCAAGCGATCAAGGCCCAAGTCGTCGTCACTACCTGAAACAATCAACACCAACAATAATACGATGATTCCTTCACCAACAAGTTGTGATGATGTGGCTACAACAACAACTAGAACATCATCATCATCATCAGAACATGAATTAAGGGACAAAACAGAGTTATTAGAGCATGATGAAGACATGGCATATTGTCTTATTCTATTGGCACAAGGCCATGATCATGATCATGATCATGCACAAAAAGCCTCATCAAAACATGATGATCATAACAACAACAAGAAGTACCTTTTTCAATGCAAGACATGTGATAGATGCTTCCCTTCATTCCAAGCCCTTGGTGGACACAGAGCAAGTCACAATAAACCCAATAATAGTAACAAATTATTATTACCAAATAATAGTTTTGTTAGTGATCTAAATCATCATGATCATCATCATGATCATTGTGGCATCAATAACACCACAAGAAGGCCTAATAATGATTTCTATGGTACTAGCATCACATCATCAACAACAAAGGCTAAATCATCACATTTGTGTTCTATATGTGGTGCTGAATTCTCATCAGGCCAAGCATTGGGGGGTCATATGAGAAGGCACAGAAATTTTTTGAGCACATCATCATCTATGAGTGGAACAGAATCCAGAGAAGCCAAGAAACCGAGAAATAATAATAATAATAATAATGATAATGTTTTGAGGTTGGATTTGAATCTTCCAGCACCACCAGAGGATGATGATCATAATCAAAGAGATCAATCATCAAAGTTCTCCTTTCAGACCAATGAAAAACTTATTGTATTCTCTACTGCATCTTCTTTGGTGGATTGCCACTACTGA 882 0.373 MQVQEELVVIKGKRTKRSRPKSSSLPETINTNNNTMIPSPTSCDDVATTTTRTSSSSSEHELRDKTELLEHDEDMAYCLILLAQGHDHDHDHAQKASSKHDDHNNNKKYLFQCKTCDRCFPSFQALGGHRASHNKPNNSNKLLLPNNSFVSDLNHHDHHHDHCGINNTTRRPNNDFYGTSITSSTTKAKSSHLCSICGAEFSSGQALGGHMRRHRNFLSTSSSMSGTESREAKKPRNNNNNNNDNVLRLDLNLPAPPEDDDHNQRDQSSKFSFQTNEKLIVFSTASSLVDCHY* 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev02g2258 293 Gene3D Classic Zinc Finger 166 247 - -
Aev02g2258 293 ProSiteProfiles Zinc finger C2H2 type domain profile. 111 138 IPR013087 -
Aev02g2258 293 SUPERFAMILY beta-beta-alpha zinc fingers 190 216 IPR036236 -
Aev02g2258 293 ProSiteProfiles Zinc finger C2H2 type domain profile. 192 214 IPR013087 -
Aev02g2258 293 ProSitePatterns Zinc finger C2H2 type domain signature. 194 214 IPR013087 -
Aev02g2258 293 MobiDBLite consensus disorder prediction 1 63 - -
Aev02g2258 293 SMART c2h2final6 192 214 IPR013087 -
Aev02g2258 293 SMART c2h2final6 111 133 IPR013087 -
Aev02g2258 293 MobiDBLite consensus disorder prediction 218 270 - -
Aev02g2258 293 Pfam C2H2-type zinc finger 111 135 - -
Aev02g2258 293 Pfam C2H2-type zinc finger 192 215 - -
Aev02g2258 293 ProSitePatterns Zinc finger C2H2 type domain signature. 113 133 IPR013087 -
Aev02g2258 293 MobiDBLite consensus disorder prediction 22 56 - -
Aev02g2258 293 PANTHER GATA ZINC FINGER DOMAIN-CONTAINING PROTEIN 15-LIKE 6 293 - -
Aev02g2258 293 PANTHER ZINC FINGER PROTEIN ZAT5 6 293 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev02g2258 Aev-Chr2 23578047 23578928 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev02g2258 7 293 C2H2 Transcription Factor Family AT5G03510 34.884 8.94e-45 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aev02g2258 zf-C2H2_6 4.1e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev02g2258 - - mtr:MTR_1g062780 190.274
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev02g2258 02 23578047 23578928 Aev09g1850 09 22080825 22081895 ECH
Aev02g2258 02 23578047 23578928 Aev02g2258 02 23578047 23578928 ECH
Aev02g2258 02 23578047 23578928 Aev10g1955 10 20909311 20910318 ECH
Aev02g2258 02 23578047 23578928 Aev04g2933 04 29092315 29093430 ECH