Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Aev02g2232 | ATGTCGGAATCCGCCGCCGCCTCCACCACCGACGCCGCTCCTCCGCCGGCACCTCACAAGAGCTGGGCTGACGAAGCTGACGACGACGACGACGCCGCCGCAGACGAAACCACAACAACGGCGCCGCCACCATCTTCGAGCTCTTCCGAAGCAACCGCAGCATCGTCTCTCAAAGTCGACGAATTGTCGATCGACGAAACCAAGAAGCCTCCGAAGCTGTTGGACGATCCCGACGACTCCAATATCCAAGCGGTTACCTCTGGCGACACGCCATACACCTCTGCATCGAGATTCGAGGACCTGAACCTCTCGCAGGAGCTGCTGAAGGGTCTCTATGTGGAGATGAAGTTCCAGAAGCCGAGCAAGATCCAAGCTATAAGCTTGCCGATGATCCTGAGCCCACCACATCGGGATTTGATAGCACAGGCGCACAATGGTTCGGGCAAGACCACATGCTTTGTTCTAGGGATGCTTAGCCGAGTGGATCCGTCTATGCAGGCTCCTCAAGCGCTCTGCATTTGCCCAACAAGGGAGCTGGCTATTCAGAACACTGAAGTTCTCCGGAAGATGGGGAAGTACACAGGGATTAGCTCAGAGTGTGCTGTTCCAACAGACCGCAGGGACTCGATTCCGATAGGAAAAAGGCCACCAATTATGGCTCAGGTGGTTATTGGGACCCCTGGCACTATAAAAAAGTGGATGACTTACAAGAAACTGGGTGTGACCAGATTGAAGATTCTTGTTTTTGATGAAGCTGATCAAATGCTTGCTGAGGATGGTTTTAAAGATGATTCCTTGAGGATAATGAAGGAAATAGAAAAAGTCAATTCTAGCTGTCAGGTTCTTCTGTTTTCTGCTACATTCAATGAAATTGTCAAGAACTTTGTATCAAGGACAATTAAGCAGGATCATAATAAACTTTTTGTGAAAAAAGAAGAACTTTCTTTAGATGCTGTGAAGCAATATAAAGTGAGTTGTCCTGATGAGCTGTCTAAGATTGAAGTGATAAAAGATTACATATTTGAAATCGGAGAGAATGTGGGCCAAACTATTATATTTGTGCGCACAAGAAATAGTGCAAAAATGCTGCATAAATCACTTGTCGATATGGGTTATGAGGTTACTTCCATTCAAGGTGATCTTGAGCATGAAGAGAGAGACAAGATTGTCAAGGAGTTTAAAGATGGTTTGACACAAGTTCTTATATCAACTGATGTTCTTGCTCGAGGCTTTGATCAGCAACAGGTTAATTTGGTTATAAACTATGATCTTCCAGTGAAACGTATGGCTGAATATTCCCGTGACCGTGAATTTGAGCCTGATTATGAGGTCTATTTGCACAGAGTGGGTAGGGCTGGACGTTTCGGGCGCAAGGGGGCTGTATTCAACCTGATATGTTCTAAAGATGATGAAAAGTTGATGTCAAAGATTGAGAATCATTTCGGCACCCATGTAACAGAGGTGCGAGAAAAAAGTGTTGAAGACTATAAAAATGCTCTTAAGCAAGCTGGGTTACTATAA | 1521 | 0.4583 | MSESAAASTTDAAPPPAPHKSWADEADDDDDAAADETTTTAPPPSSSSSEATAASSLKVDELSIDETKKPPKLLDDPDDSNIQAVTSGDTPYTSASRFEDLNLSQELLKGLYVEMKFQKPSKIQAISLPMILSPPHRDLIAQAHNGSGKTTCFVLGMLSRVDPSMQAPQALCICPTRELAIQNTEVLRKMGKYTGISSECAVPTDRRDSIPIGKRPPIMAQVVIGTPGTIKKWMTYKKLGVTRLKILVFDEADQMLAEDGFKDDSLRIMKEIEKVNSSCQVLLFSATFNEIVKNFVSRTIKQDHNKLFVKKEELSLDAVKQYKVSCPDELSKIEVIKDYIFEIGENVGQTIIFVRTRNSAKMLHKSLVDMGYEVTSIQGDLEHEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLVINYDLPVKRMAEYSRDREFEPDYEVYLHRVGRAGRFGRKGAVFNLICSKDDEKLMSKIENHFGTHVTEVREKSVEDYKNALKQAGLL* | 507 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Aev02g2232 | 506 | Gene3D | - | 75 | 312 | IPR027417 | - | |
Aev02g2232 | 506 | PANTHER | DEAD-BOX HELICASE DBP80 | 75 | 486 | - | - | |
Aev02g2232 | 506 | MobiDBLite | consensus disorder prediction | 38 | 56 | - | - | |
Aev02g2232 | 506 | MobiDBLite | consensus disorder prediction | 61 | 76 | - | - | |
Aev02g2232 | 506 | SMART | ultradead3 | 116 | 322 | IPR014001 | - | |
Aev02g2232 | 506 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 335 | 497 | IPR001650 | - | |
Aev02g2232 | 506 | Pfam | DEAD/DEAH box helicase | 122 | 294 | IPR011545 | GO:0003676|GO:0005524 | |
Aev02g2232 | 506 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 168 | 474 | IPR027417 | - | |
Aev02g2232 | 506 | Gene3D | - | 313 | 504 | IPR027417 | - | |
Aev02g2232 | 506 | CDD | SF2_C_DEAD | 319 | 465 | - | - | |
Aev02g2232 | 506 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 130 | 306 | IPR014001 | - | |
Aev02g2232 | 506 | ProSiteProfiles | DEAD-box RNA helicase Q motif profile. | 96 | 125 | IPR014014 | GO:0003724 | |
Aev02g2232 | 506 | PANTHER | ATP-DEPENDENT RNA HELICASE DBP3 | 75 | 486 | - | - | |
Aev02g2232 | 506 | MobiDBLite | consensus disorder prediction | 1 | 93 | - | - | |
Aev02g2232 | 506 | CDD | DEADc_DDX19_DDX25 | 103 | 302 | - | - | |
Aev02g2232 | 506 | Pfam | Helicase conserved C-terminal domain | 332 | 456 | IPR001650 | - | |
Aev02g2232 | 506 | SMART | helicmild6 | 361 | 456 | IPR001650 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Aev02g2232 | Aev-Chr2 | 23389410 | 23392910 | Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Aev02g2232 | 62 | 488 | Eukaryotic Initiation Factors Gene Family | AT1G72730 | 35.092 | 8.97e-71 | 229 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Aev02g2232 | K18655 | - | gmx:100784739 | 719.924 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Aev02g2232 | 02 | 23389410 | 23392910 | Aev02g2232 | 02 | 23389410 | 23392910 | ECH |