Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev02g2229 ATGGCGGCGGCGATGGTTGTTCCGGCGATGGCGACGGCGTCGATTTACGTCGGAGACCTTCACCCTGATGTGTCCGAAGGCGAGCTCCTGGATGCGTTCTCGGAGTTCAATACCACCGCTTCCGTTCGCATTTGCAGAGACTCCGCCACAGGGAGGTCACTCTGTTACGGTTACGTCAACTTCATCTCTCACCAAGACGCAAGTCGTGCCATTGAGGTGAAGAATCATTCTTCACTGCATGGAAAAGTGATAAGGGTCATGTGGTCGCATCGTGATCCAGATGCAAGGAGAAGTGGCAGAGGGAATGTTTTTGTTAAGAACTTAGCTGAGTCCATAGATAATGCGGAATTGCATGAATTATTTCAAAAATATGGCAATATCTTGTCCAGCAAAGTTGTCACTTCTGAGGAAGGGAAAAGCAAAGGGTATGGCTTTGTTCAGTTTGAGTCTGAGGAATCTGCAAATACTGCCATCGAGAAGCTGAATGGTTCTACTGTTACAGATAAGCAGATATATGTTGGAAAATTTGTCAAAAAGAGTGATCGCATATTGCCTGACCCTAATGCCAAATATACAAATTTGTACATCAAGAATTTGGACCAAGATATTACAGAAGCACTTCTTCAGGAAAAGTTTTCATCTTTTGGGAAAATTATTAGCTTGGCTATTGCAAAAGACGAGAATGGGCTGTCAAAAGGTTTTGCTTTTGTGAACTATGATAAGCCAGATGATGCTAGACAGGCAATGGAAGCAATGAATGGATCACAATTCGGTTCAAAGAATCTATATGTAGCCAAGGCACAAAAGAAGGCTGAGCGTGAACAGATCTTGCACCATCAGTTTGAGGAGAAACGTAAGGAACAATTTCAGAAATATAAGGGATCAAACATCTATGTGAAGAACATTACTGATACTGTGACTGACGAACAACTAAGAGATCACTTTAGTGCATGTGGCACAATAACATCTGCTAAAGTCATGCGAGATGAGAAAGGTATAAGCAAGGGATTTGGTTTTGTCTGCTTCTCCACCGCTGAGGAGGCCAATCAAGCTGTGAGCACTTTCCATGGATGGATGTTCCATGGTAAACCACTATATGTTGCTATTGCTCAGAGGAAAGAGGATAGGCAAACACAGTTGCAGCTCCAATTTGCTCAGCAATTAGCAGGAGTAGGGGCACCTTCAACTGCAGTTATCCATGGTGGATATCCTCGATACTTCTATGCAACTGCTGGCGGTGTCGTTTCACATGTGCCTACTCGACCTGGGATGGTATATCAACCTCTGGGATTGAGGTCAGGATGGAGGGCTAATGGTTTTGTACCTCCAACTAGAGCATTTCAACAATCACCAGCTCCAAATGTTTCAAACATTACAACAAGGCAGCATAGGCAAAACAGGGGTAGGATGAACGGGCATATAAATTCACAGGGAAGAGCATTCTCTGGTACCACTCAACTGCATCAGTCTTCTCAGTCAGCGGCTTCTTCCAACGAGTCAAGTACTCGCCAGGCTATGTATGTTCCCATTGGACACCACCAGCATGAGATGGAAAAAGGATCTAGAATTCCATCTTCCGGAGGAGCGCAGCAGCGATCAGAAATACTGCAAAGCATGCTCGCCACTGCTATTCCTGAGCAACAGAAACAGTTGCTTGGCGAGCACCTTTACCCACTCATAAAAAAACTCAAGCCTGGCCTAGCAGCAAAGATTACAGGAATGCTTTTGGAGATGGACAATGCAGAATTGCTGGTGCTTCTGGAATCACCAGAGTCACTTTCTGCCAAGGTGGAAGAAGCTGTGCAAGTTCTAAACCAGTCCTCCAATACCAATGTCTCTGGCAAGGATTCACTTCATCCAAATTTCCTCTCGGCTGAGGACCACCTATGTTTTCTTGCCTTAGGGTTGAATAATAGTAGTAATGCTCAAACTCACCTGCGCGCGTCCTCCCCCAAGTTCCCTGGTGTCGCCGTTAACCACCACAACAACCACCGTGACCAGCCACCACCGATGGGTAGCAAGAGTAGGAAAGAAAGAAGATCTAGAAGATCAGATGACTCTGCATCAGAGTCACCTTCACGCTCTGAGGATTCAGACACCCGTGATTCGTCCCCCGAGAGGGGCTCTGAGAGTCGGAGAACAAGCAGTCACCACCGCAGTCACAGAAGCAGCAGTAGTCGATCACGGCGGTGGAGCAAGCGAGACTCAGATAGTTCCTATGATGATGACAGTGATGAGAGTGGTGATAGGGGTGGTGGTAGCAGGACTAAGAAAAAGTCTTCCAGGAACATCACTGAAGAGGAAATAACACAGTACATGGCGAGAAAGGCCCAGAGAAAGGCTTTGAAGGTTGCTAAGAAATTAAAGACTCAAACTGTATCTGGGTATTCAAATGACTCAAATCCATTTGGTGACTCTAATCTTAATGAGAAGTTTGTTTGGCGCAAGAAGATTGAACGTGATGTTGCTCAAGGGGTACCTATTGATACATTTTCAGTTAAAGCTGAGAAAAAGAGGCAGAGAGAAAGGATGGCAGAAATTGAGAAGGTGAAAAAAAGAAGAGAGGAAAGGGCACTTGAGAAAGCACAACACGAGGAAGAAATGGCTTTGTTAGCTAGAGAACGTGCTAGAGCTGAATTCCAGGACTGGGAAAAAAGAGAAGAGGAGTTTCATTTTGATCAAAGCAAGGTTAGGTCAGAGATTAGATTGCGTGAAGGGCGTGCCAAGCCAATTGATGTCTTAACCAAGCAGCTGAATGGTACCGATGATTTGGATATAGAAATAAATGAACCATACATGGTCTTCAAGGGTTTGACAGTGAAAGAAATGGAAGAGCTTCGTGATGACATCAAAATGCATCTGGACCTTGACAGGGCTACTCCAACCCATGTACAATATTGGGAGGCACTCCTCCTGGTGTGTGATTGGGAGCTAGCTGAAGCTCGAAAAAAAGATGCACTTGATCGAGCTAGGGTGCGTGGAGAAGAACCTCCGGCTGAGCTGCTTGCCGAAGAAAGGGGTCTGCATTCCAGTATTGAGCCAGATGTGAAGAGGCTTTTGCAGGGGAAGACACATGCAGAGTTGGAAGCTTTACAGGCACATATTGAGTCAGAGATGCGTACTGGTACAGCAAAGGTGGTTGAGTATTGGGAGGCTGTTTTAAAACGCCTCCATATATACAAGGCCAAGGCTTGTTTAAAAGAAATTCATGCTAAAATGTTGCGCAAGCATTTGCAACTCCTTGAACAACCATTGGATGATGAAGATAAAATCGAAGAAGCACATGCCTTCAAATCTGAGGAAGAGACCGAGGATATGAAAGTCCGATCTGCAGATGAATCTTTTTCACCAGAACCCATTAAAGAAGAGGTTGAGGAAGTTGAAGATGAGCCTGGGTCATTTTCGCCAGAACTTCTGCATGGTGATGAGTATGAAGAAGCAGCTATCGACCCTGAAGAGGATAGGGCGCAATTGGAGCGGAAACGTATGGCCGTATTAGAAGAGCAGCAGAGACGAATTCAGGAGGCAATGGCATCAAAGCCTGGTCCGCCTGAAGATCATTTTGAGATGAAGGCCATGAAAGCTATGGGAGCTATGGAAGATGGTGATGCAGTGTTTGGCTCTGGTGCTGAAGTGAATCTAGATTCACAGGTTTATTGGTGGCATGACAAATACAGGCCGAGGAAGCCGAAGTATTTCAACCGCGTTCACACTGGATACGAATGGAACAAATATAATCAAACTCACTATGATCATGACAATCCACCTCCGAAGATAGTTCAGGGCTACAAATTCAACATTTTCTACCCAGACCTTGTAGACAAGACAAAAGCTCCAACCTACACTATTGAGAAGGATGGCAGCAATGGTGAGACCTGCATTATACGATTCCACGCGGGACCACCATATGAGGACATTGCTTTCCGCATTGTAAACAAAGAATGGGAGTATTCTCATAAGAAGGGTTTCAAGTGCACGTTTGAACGCGGAATTCTACACGTCTACTTCAACTTCAAACGCTATCGCTACCGCCGATGA 4038 0.4532 MAAAMVVPAMATASIYVGDLHPDVSEGELLDAFSEFNTTASVRICRDSATGRSLCYGYVNFISHQDASRAIEVKNHSSLHGKVIRVMWSHRDPDARRSGRGNVFVKNLAESIDNAELHELFQKYGNILSSKVVTSEEGKSKGYGFVQFESEESANTAIEKLNGSTVTDKQIYVGKFVKKSDRILPDPNAKYTNLYIKNLDQDITEALLQEKFSSFGKIISLAIAKDENGLSKGFAFVNYDKPDDARQAMEAMNGSQFGSKNLYVAKAQKKAEREQILHHQFEEKRKEQFQKYKGSNIYVKNITDTVTDEQLRDHFSACGTITSAKVMRDEKGISKGFGFVCFSTAEEANQAVSTFHGWMFHGKPLYVAIAQRKEDRQTQLQLQFAQQLAGVGAPSTAVIHGGYPRYFYATAGGVVSHVPTRPGMVYQPLGLRSGWRANGFVPPTRAFQQSPAPNVSNITTRQHRQNRGRMNGHINSQGRAFSGTTQLHQSSQSAASSNESSTRQAMYVPIGHHQHEMEKGSRIPSSGGAQQRSEILQSMLATAIPEQQKQLLGEHLYPLIKKLKPGLAAKITGMLLEMDNAELLVLLESPESLSAKVEEAVQVLNQSSNTNVSGKDSLHPNFLSAEDHLCFLALGLNNSSNAQTHLRASSPKFPGVAVNHHNNHRDQPPPMGSKSRKERRSRRSDDSASESPSRSEDSDTRDSSPERGSESRRTSSHHRSHRSSSSRSRRWSKRDSDSSYDDDSDESGDRGGGSRTKKKSSRNITEEEITQYMARKAQRKALKVAKKLKTQTVSGYSNDSNPFGDSNLNEKFVWRKKIERDVAQGVPIDTFSVKAEKKRQRERMAEIEKVKKRREERALEKAQHEEEMALLARERARAEFQDWEKREEEFHFDQSKVRSEIRLREGRAKPIDVLTKQLNGTDDLDIEINEPYMVFKGLTVKEMEELRDDIKMHLDLDRATPTHVQYWEALLLVCDWELAEARKKDALDRARVRGEEPPAELLAEERGLHSSIEPDVKRLLQGKTHAELEALQAHIESEMRTGTAKVVEYWEAVLKRLHIYKAKACLKEIHAKMLRKHLQLLEQPLDDEDKIEEAHAFKSEEETEDMKVRSADESFSPEPIKEEVEEVEDEPGSFSPELLHGDEYEEAAIDPEEDRAQLERKRMAVLEEQQRRIQEAMASKPGPPEDHFEMKAMKAMGAMEDGDAVFGSGAEVNLDSQVYWWHDKYRPRKPKYFNRVHTGYEWNKYNQTHYDHDNPPPKIVQGYKFNIFYPDLVDKTKAPTYTIEKDGSNGETCIIRFHAGPPYEDIAFRIVNKEWEYSHKKGFKCTFERGILHVYFNFKRYRYRR* 1346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev02g2229 1345 SMART rrm1_1 102 174 IPR000504 GO:0003723
Aev02g2229 1345 SMART rrm1_1 193 265 IPR000504 GO:0003723
Aev02g2229 1345 SMART rrm1_1 296 368 IPR000504 GO:0003723
Aev02g2229 1345 SMART rrm1_1 14 87 IPR000504 GO:0003723
Aev02g2229 1345 Gene3D - 103 181 IPR012677 -
Aev02g2229 1345 MobiDBLite consensus disorder prediction 1095 1138 - -
Aev02g2229 1345 Gene3D - 276 383 IPR012677 -
Aev02g2229 1345 Gene3D - 182 275 IPR012677 -
Aev02g2229 1345 SUPERFAMILY PABC (PABP) domain 529 608 IPR036053 GO:0003723
Aev02g2229 1345 SMART poly_2 544 607 IPR002004 GO:0003723
Aev02g2229 1345 CDD RRM4_I_PABPs 294 372 - -
Aev02g2229 1345 Pfam Cactus-binding C-terminus of cactin protein 1221 1345 IPR019134 GO:0005515
Aev02g2229 1345 MobiDBLite consensus disorder prediction 670 713 - -
Aev02g2229 1345 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 13 605 IPR006515 GO:0003723
Aev02g2229 1345 MobiDBLite consensus disorder prediction 464 503 - -
Aev02g2229 1345 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 192 269 IPR000504 GO:0003723
Aev02g2229 1345 CDD RRM2_I_PABPs 99 175 IPR045305 -
Aev02g2229 1345 SMART CactinC_cactus_3 1221 1345 - -
Aev02g2229 1345 CDD RRM1_I_PABPs 14 93 - -
Aev02g2229 1345 SMART rrm2_1 193 265 IPR003954 GO:0003676
Aev02g2229 1345 SMART rrm2_1 102 174 IPR003954 GO:0003676
Aev02g2229 1345 SMART rrm2_1 296 368 IPR003954 GO:0003676
Aev02g2229 1345 SUPERFAMILY RNA-binding domain, RBD 191 376 IPR035979 GO:0003676
Aev02g2229 1345 Coils Coil 837 881 - -
Aev02g2229 1345 MobiDBLite consensus disorder prediction 643 764 - -
Aev02g2229 1345 Pfam Poly-adenylate binding protein, unique domain 540 604 IPR002004 GO:0003723
Aev02g2229 1345 PANTHER BNAC05G02180D PROTEIN 616 1345 - -
Aev02g2229 1345 SUPERFAMILY RNA-binding domain, RBD 14 180 IPR035979 GO:0003676
Aev02g2229 1345 Gene3D - 530 618 - -
Aev02g2229 1345 Coils Coil 264 284 - -
Aev02g2229 1345 MobiDBLite consensus disorder prediction 714 728 - -
Aev02g2229 1345 MobiDBLite consensus disorder prediction 1095 1121 - -
Aev02g2229 1345 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 15 85 IPR000504 GO:0003723
Aev02g2229 1345 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 103 171 IPR000504 GO:0003723
Aev02g2229 1345 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 194 262 IPR000504 GO:0003723
Aev02g2229 1345 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 297 365 IPR000504 GO:0003723
Aev02g2229 1345 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 532 609 IPR002004 GO:0003723
Aev02g2229 1345 Pfam Conserved mid region of cactin 873 1070 IPR018816 -
Aev02g2229 1345 Gene3D - 8 102 IPR012677 -
Aev02g2229 1345 Coils Coil 1156 1176 - -
Aev02g2229 1345 PANTHER POLYGLUTAMINE BINDING PROTEIN 1/MARVEL MEMBRANE-ASSOCIATING DOMAIN CONTAINING 3 616 1345 - -
Aev02g2229 1345 MobiDBLite consensus disorder prediction 729 764 - -
Aev02g2229 1345 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 295 372 IPR000504 GO:0003723
Aev02g2229 1345 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 101 178 IPR000504 GO:0003723
Aev02g2229 1345 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 13 91 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev02g2229 Aev-Chr2 23369972 23380411 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev02g2229 11 625 Eukaryotic Initiation Factors Gene Family AT2G36660 53.958 0.0 620
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev02g2229 K25058 - gmx:100780087 1021.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev02g2229 02 23369972 23380411 Aev02g2229 02 23369972 23380411 ECH
Aev06g0331 06 2426439 2430084 Aev02g2229 02 23369972 23380411 PCT