Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev02g2196 ATGATCCATAAACGAAGGGCAGGGAGGAAGAAATTCCAAGAGACTAGGCACCCAATTTACAAAGGTGTGAGGCAAAGGAATGGGAAATGGGTTTGTGAGCTTAGGGAACCCAAAAACAATAAAACTAGGGTATGGCTTGGGACATTCTCACACCCTCACATGGCAGCTATAGCATACGATGTCGCGGCTCTGGCGTTCAGAGGAGAGAATGCTTCCCTGAATTTTCCTCAAGCCGCGACATCCTTGCCGCGACTTAACAGAGAAACAAACTCTATAAAGACCATCCAGATTGCCGCGATGCAGGCGGCCGAGAAGCACTATTTTTTTATCAAGAAGGAGGAAGAAAATGTTGAAGCCAAAGATAGTATTAACATTATTATCAATAACAATGATAGTAGTGATAATAATTCTGCTTCTTCTCCTCATCATGATGATGATGAGTATGAGTTTCCTTTGGATTGTTGCCTTTTTGGTTCTTCTTCAACTTCTATAATTGAAAAAAGTGAACTAGAAGAAGAAGATTCTAGAAGATTCTATTGGGATGAAGAGGAGGTTTTTGACATGCCAGGGTTGATGAATAGCTTGGCTGAAGGGTTGATTATAACACCACCAGCTTTGCAAAGTGGGTTCAGTTGGGTTGGTGGAGAAACTACTGTGGACTTGACTCTATGGGGAGATTGA 681 0.4214 MIHKRRAGRKKFQETRHPIYKGVRQRNGKWVCELREPKNNKTRVWLGTFSHPHMAAIAYDVAALAFRGENASLNFPQAATSLPRLNRETNSIKTIQIAAMQAAEKHYFFIKKEEENVEAKDSINIIINNNDSSDNNSASSPHHDDDEYEFPLDCCLFGSSSTSIIEKSELEEEDSRRFYWDEEEVFDMPGLMNSLAEGLIITPPALQSGFSWVGGETTVDLTLWGD* 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev02g2196 226 PANTHER CBF/DREB1 TRANSCRIPTION FACTOR 158 224 - -
Aev02g2196 226 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 9 147 - -
Aev02g2196 226 SMART rav1_2 19 82 IPR001471 GO:0003700|GO:0006355
Aev02g2196 226 Pfam AP2 domain 18 68 IPR001471 GO:0003700|GO:0006355
Aev02g2196 226 ProSiteProfiles AP2/ERF domain profile. 19 76 IPR001471 GO:0003700|GO:0006355
Aev02g2196 226 CDD AP2 18 78 IPR001471 GO:0003700|GO:0006355
Aev02g2196 226 PRINTS Ethylene responsive element binding protein signature 58 78 IPR001471 GO:0003700|GO:0006355
Aev02g2196 226 PRINTS Ethylene responsive element binding protein signature 20 31 IPR001471 GO:0003700|GO:0006355
Aev02g2196 226 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 158 224 - -
Aev02g2196 226 PANTHER CBF/DREB1 TRANSCRIPTION FACTOR 9 147 - -
Aev02g2196 226 Gene3D AP2/ERF domain 19 78 IPR036955 GO:0003700|GO:0006355
Aev02g2196 226 SUPERFAMILY DNA-binding domain 19 77 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev02g2196 Aev-Chr2 23112409 23113089 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev02g2196 4 224 AP2-EREBP Transcription Factor Family AT4G25470 39.462 1.75e-39 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Aev02g2196 AP2 5.5e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev02g2196 - - aprc:113870892 259.225
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev02g2196 02 23112409 23113089 Aev02g2196 02 23112409 23113089 ECH
Aev02g2196 02 23112409 23113089 Aev06g0357 06 2641104 2641706 PCT