LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aev02g2115	ATGTCCATAAATCACTACTCCTCCTTGGACCTTCCAGAAACTACACTTTGGTGGACTCAAAATCCTCAACAACAAATCCAAATTATGGAACCAATTCCAAATCCCTCTTGGTCTCTTCACCATCACAAAAACCTCTTCAACCTCAACCACAACGAAGAAGAACAAGAATTAGAACAACAAAACAACAACAATGAACAAGACACTACTACTTCACAAGAAGAGCAAGAAGGAGAACATGAACATCAACAACAAGAGGAAGAAGAAGAGAAAGAACCAATGTTCGAGAAACCATTGACTCCTAGTGATGTTGGGAAGTTAAACCGCTTGGTGATCCCGAAGCAGCACGCAGAGAAGTACTTTCCTCTAGGTGCAGCGATAACTTCTTCAACTGCTTCTGACTTTGGGGAGTGTAAAGGTTTGTTGCTTAGTTTCGAGGACGAGTCAGGAAAGTGTTGGAGGTTCCGTTACTCTTATTGGAACAGTAGTCAGAGCTATGTTTTGACGAAAGGATGGAGCCGTTACGTCAAGGACAAGCGCCTTGACGCTGGCGACATCGTTTCGTTTGAGCGCCACCGTGGCGACTCGCAGAGGCTGTTTATTAGGTGGAGGAGGCGGTCTTCTGTGGATGTCACGGTGGCGCAGGTTAGCAGAGCGGGACACGGTGGTGGCGGCGGTGACGGGAATAATGGGAAGAGTGGTGGTGGTGGTGGAGTGGGGTGGACCAGTGGGTTCTATCGTGCGCACCCTTCTTATCCTACGCATCATCATCAACAACAATTGGCGTATCAACACCAACAACATGAGGGGCTTCATGCAGGTGAAGGCAGTACTAGCCAAGGTTTGAACCAAAGGACAAGAGCAACAATATTAGGGAACTGTTCAAGTTCAAGTTCTTCAAGTTCAAAGGTACTTAGGCTTTTTGGGGTGAACATGGAATGCCAACCACAACATGAGGATGATGATTCAACACTACCAGAATGTTCCTACAATAATAATAATAACAATGTCATTAATCATAATCAACCTCCTAATTCTTATTCTAATTCTCACATGCTACATCAACAACCATACTATTACTAG	1080	0.4481	MSINHYSSLDLPETTLWWTQNPQQQIQIMEPIPNPSWSLHHHKNLFNLNHNEEEQELEQQNNNNEQDTTTSQEEQEGEHEHQQQEEEEEKEPMFEKPLTPSDVGKLNRLVIPKQHAEKYFPLGAAITSSTASDFGECKGLLLSFEDESGKCWRFRYSYWNSSQSYVLTKGWSRYVKDKRLDAGDIVSFERHRGDSQRLFIRWRRRSSVDVTVAQVSRAGHGGGGGDGNNGKSGGGGGVGWTSGFYRAHPSYPTHHHQQQLAYQHQQHEGLHAGEGSTSQGLNQRTRATILGNCSSSSSSSSKVLRLFGVNMECQPQHEDDDSTLPECSYNNNNNNVINHNQPPNSYSNSHMLHQQPYYY*	360

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Aev02g2115	359	SUPERFAMILY	DNA-binding pseudobarrel domain	90	207	IPR015300	-
Aev02g2115	359	MobiDBLite	consensus disorder prediction	315	359	-	-
Aev02g2115	359	MobiDBLite	consensus disorder prediction	54	101	-	-
Aev02g2115	359	MobiDBLite	consensus disorder prediction	249	280	-	-
Aev02g2115	359	MobiDBLite	consensus disorder prediction	72	96	-	-
Aev02g2115	359	Coils	Coil	43	70	-	-
Aev02g2115	359	ProSiteProfiles	B3 DNA-binding domain profile.	94	205	IPR003340	GO:0003677
Aev02g2115	359	PANTHER	B3 DOMAIN-CONTAINING PROTEIN OS11G0156000	42	332	-	-
Aev02g2115	359	CDD	B3_DNA	92	196	IPR003340	GO:0003677
Aev02g2115	359	MobiDBLite	consensus disorder prediction	216	235	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Aev02g2115	Aev-Chr2	22637419	22640010	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aev02g2115	87	328	RAV Transcription Factor Family	AT5G06250	49.194	2.88e-64	203

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	B3	Aev02g2115		B3	1.2e-28	CL0405

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aev02g2115	-		-	aprc:113872948	335.109

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Aev02g2115	02	22637419	22640010	Aev02g2115	02	22637419	22640010	ECH
	Aev06g0431	06	3097555	3099397	Aev02g2115	02	22637419	22640010	PCT

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