Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev02g2068 ATGGATGAAATTGATGTTCCTCCATTTTTCCTATGCCCAATTTCACTGGAAATCATGAAGGATCCAGTTACAGTCTCCACAGGCATCACTTACGATAGAGAGAGCATAGAAAAATGGCTATCAAAAAACAATACTTGCCCCGTCACCAAACAACGGCTTGAGATTATCTCAGACGGCAGCGGTGACAGCACTACTGCTGCTGCCGTACTAGATAATCTCACGCCGAACCACACGCTAAGGAGATTGATCCAAGCGTGGTGCATAATGAATGCCTCCCACGGCGTAGAAAGGATTCCGACGCCCAAGCCACCAGTGAGCAAAACAGAAGTAGCAAAGCTCATTAAGGACGCTTCCGAGTCACCACAGTTAATGGCACAGTGCCTGGCAAGGATCAGATCGATTGCCTCCGAGAGCGAGGCGAATCGACGGTGCATCGAATCAGCTGGCGCCGTCGAGTTCTTAGCATCAATTGTGATTAACAACACAATCACAATGCTATCTTCTTCACCTTCATCATCTTCATTGCTTGAATTAGAGGCGAATCCTGATGACGACGGATTCGACTCTAAATCAGGCGATGCAGATGAAGCATTATGCATTCTCCACACACTAAATCTATCAGAATCAAGCTTGAAGAAACTCCTAACATTCAAAAACGGACAGTTTCTAGATTCATTAACAAGAGTATTACAGAGAGGGTTCTACGAATCAAGAGCTTACTCTGTTTTTCTGCTGAAATCGATCTCAGAAATCGCAGATCCAGTTCAAATCGCGAGCATGAAGAACGAGCTTTTCGTCGAATTAGTTCAGATCCTAAAAGACCAAATCTCAACGAAATCATCAAAATCAACGCTACAAACACTAATCCACCTCTGTGTTTGGGGAAGAAACAGAGCAAAAGCAGTAGAATCAGGAGCAATACCTGTTCTGATCGATCTCCTCCTCGATTCGAAGGAGCGAAAACCGTGCGAGATGATGCTGATTCTTCTGGAGATTCTTTCTCAGTGCGCTGACGGAAGAGCGGAGATTCTATGCCACGGCGCGGGATTAGCAATCGTATCGAAGAAGATTCTGAGAGTGTCAACAATGGCGAATGATAGAGCGGTTAGGATTCTGTTATCGATTGCGAGATATTCGGCAACGCCGATTGTGGTTCAAGAAATGCTGAATTTAGGGATTGTGGCTAAGTTGTGTTTGGTTCTGCAAGTTGACAGTGGGAATAAGGCAAAGGAAAAAGCAAGGGAGATTCTGAAATTGCATGCTAAGTATTGGAGGAATTCACCTTGTTTGCCTTCTAATTTTCTCTCTGCATATCCAACTAATTAA 1326 0.4434 MDEIDVPPFFLCPISLEIMKDPVTVSTGITYDRESIEKWLSKNNTCPVTKQRLEIISDGSGDSTTAAAVLDNLTPNHTLRRLIQAWCIMNASHGVERIPTPKPPVSKTEVAKLIKDASESPQLMAQCLARIRSIASESEANRRCIESAGAVEFLASIVINNTITMLSSSPSSSSLLELEANPDDDGFDSKSGDADEALCILHTLNLSESSLKKLLTFKNGQFLDSLTRVLQRGFYESRAYSVFLLKSISEIADPVQIASMKNELFVELVQILKDQISTKSSKSTLQTLIHLCVWGRNRAKAVESGAIPVLIDLLLDSKERKPCEMMLILLEILSQCADGRAEILCHGAGLAIVSKKILRVSTMANDRAVRILLSIARYSATPIVVQEMLNLGIVAKLCLVLQVDSGNKAKEKAREILKLHAKYWRNSPCLPSNFLSAYPTN* 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev02g2068 441 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 97 IPR013083 -
Aev02g2068 441 Gene3D - 109 425 IPR011989 -
Aev02g2068 441 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PUB23 1 439 - -
Aev02g2068 441 SUPERFAMILY ARM repeat 79 426 IPR016024 -
Aev02g2068 441 CDD RING-Ubox_PUB 10 51 IPR045210 -
Aev02g2068 441 Pfam U-box domain 6 53 IPR003613 GO:0004842|GO:0016567
Aev02g2068 441 PANTHER WDSAM1 PROTEIN 1 439 IPR045185 GO:0061630
Aev02g2068 441 SUPERFAMILY RING/U-box 3 93 - -
Aev02g2068 441 SMART Ubox_2 9 86 IPR003613 GO:0004842|GO:0016567
Aev02g2068 441 ProSiteProfiles U-box domain profile. 5 93 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev02g2068 Aev-Chr2 22259354 22260679 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev02g2068 1 439 U-box Gene Family AT3G52450 55.679 4.17e-169 480
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev02g2068 - - gmx:100811258 574.318
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev02g2068 02 22259354 22260679 Aev02g2068 02 22259354 22260679 ECH
Aev02g2068 02 22259354 22260679 Aev06g0473 06 3413997 3415277 PCT