Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev02g1962 ATGTACATATGTCAGAAAATGGGTCGTGGAAGAATACCTATGAAACTTATCTCAAGGGAGAAAGCTCGGAAGACAACATTCATAAAGAGAAAGAAAGGCCTAATGAAGAAAGTCTATGAATTTTCTACTCTTTGTGGTGTTGATGTTTGTGTTATTATCTATGGTCCAAATTTTGATGATGATGATAATAATGGAAAAATTGTTGAACCCGAGACATGGCCACAAGACATTGATAAGGTAAATCGTATAATTCAAAAATACTATGATACTACTAGTGATAGGCGTCCTAAGATCTATGATGTTCAAGAGTATTACAAAGATAGGATTCAAAAAGTTGAAGCTGAAATTTCAAAAGTTCATAAGGAGAAGCTAAAGATTATGTACCCTACTTGGGATGAATCATTCAATGATTTGAGAGAGGATCAATTGAGGATGTTTGTTAGTGTTTTGGATGCTAAGATTGATTCTTGCAATCAAAGAATCAATTTTCTAAAACAAGTTGGTCCAAAGGGAAAATCAATTGTGGAACCAAACAAGGTGGATGATGAGACAATTATTATTGATCCTAGTAGTAGTAGTAGCTACCTTAATTTCATTCATAATAATATGTCTCATCAAGAAGAACAAATTTTTCCACCTCCTCTTATGAATCCAAATCCAATTAGTAGTGAGATGAACAAGCAACAATTACTATTTTACCCTTTTCAATTTGGGGAGAGTTCATCATCATCAAAATCTTGTTCAATGCTTCAATTTGATCAAGATAGCATGCAATTGATGGGGAAAAGTAATAATGGAATGATGATGAATTGGGGTGATGAGCAAGTAGGGTATGGTTCTTTTAATTATGATGCTAAAATTATTGATCATATGGTAAAGGACAATAATGGAGCACATAATCAAAGTGATGAAAATTCCTTATTATCATCATCACCATATTACTATGGAAATATACAACAAACAATGGAGCCATATACTACTAGTTTTGCTTCTCATGAGGACCCATCAATTCAGTTTCAAGCAACAAGTTTCCAAAATGTAATGGATGTGCCACCTGGGTTTCAAATCAATGGACTCTGA 1080 0.3343 MYICQKMGRGRIPMKLISREKARKTTFIKRKKGLMKKVYEFSTLCGVDVCVIIYGPNFDDDDNNGKIVEPETWPQDIDKVNRIIQKYYDTTSDRRPKIYDVQEYYKDRIQKVEAEISKVHKEKLKIMYPTWDESFNDLREDQLRMFVSVLDAKIDSCNQRINFLKQVGPKGKSIVEPNKVDDETIIIDPSSSSSYLNFIHNNMSHQEEQIFPPPLMNPNPISSEMNKQQLLFYPFQFGESSSSSKSCSMLQFDQDSMQLMGKSNNGMMMNWGDEQVGYGSFNYDAKIIDHMVKDNNGAHNQSDENSLLSSSPYYYGNIQQTMEPYTTSFASHEDPSIQFQATSFQNVMDVPPGFQINGL* 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev02g1962 359 SUPERFAMILY SRF-like 7 88 IPR036879 GO:0003677|GO:0046983
Aev02g1962 359 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL82 9 283 - -
Aev02g1962 359 SMART madsneu2 7 73 IPR002100 GO:0003677|GO:0046983
Aev02g1962 359 Gene3D - 20 111 IPR036879 GO:0003677|GO:0046983
Aev02g1962 359 ProSiteProfiles MADS-box domain profile. 7 57 IPR002100 GO:0003677|GO:0046983
Aev02g1962 359 PANTHER MADS BOX PROTEIN 9 283 - -
Aev02g1962 359 PRINTS MADS domain signature 29 44 IPR002100 GO:0003677|GO:0046983
Aev02g1962 359 PRINTS MADS domain signature 9 29 IPR002100 GO:0003677|GO:0046983
Aev02g1962 359 PRINTS MADS domain signature 44 65 IPR002100 GO:0003677|GO:0046983
Aev02g1962 359 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 17 57 IPR002100 GO:0003677|GO:0046983
Aev02g1962 359 CDD MADS_SRF_like 8 57 IPR033897 GO:0000981|GO:0000987|GO:0045944
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev02g1962 Aev-Chr2 21421656 21422735 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev02g1962 7 235 Type I MADS-box Gene Family AT5G55690 33.913 8.97e-32 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Aev02g1962 SRF-TF 7.6e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev02g1962 - - aip:107640879 313.923