Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev02g1847 ATGGAAATGGCTTCTTCCAGCCCCCGAACCGCCGAAGAGATCTTCAAGGACTTCACCGCCCGCAGAACCGCCATCGTTCGCGCTTTATCTCAAGATGTTGATGAATTTTATGGGCTCTGTGATCCAGATAAGGAGAACTTGTGCCTCTATGGACACCCAAATGAGACTTGGGAAGTGACTCTGCCTGCTGAGGAAGTTCCGCCGGAGCTTCCGGAGCCTGCTCTCGGAATCAATTTTGCTAGGGACGGCATGAACCGCAGGGACTGGCTTTCCCTCGTTGCTGTGCACAGCGATTCATGGTTGCTTTCTGTTGCTTTTTATCTTGGAGCTCGTCTTAATCGCAATGAAAGGAAGCGTTTATTTAGCTTCATCAATGATCTTCCAACTGTTTTTGAAGTTGTGACTGAGAAGAAGCCAGTAAAGGACAAGCCTACTGCAGACAGTGGAAGCAAATCTCGGGGCAGCACCAAGAGATCAAGTGATGGGCAAGTCAAAAGCAACCCAAAGTTTGATGAGGGTTACGACGAGGAAGACGACGAACACAGCGACACCCTTTGTGGGAGCTGTGGCGGGAACTACAACGCCGATGAGTTTTGGATCGGCTGCGATATATGCGAGAAGTGGTTCCATGGGAAATGTGTGAAGATCACTCCTGCAAAAGCTGAGAGCATAAAGCAATACAAATGCCCTCAATGCAGCCAGAGGAGGGGAAGACCTTAG 720 0.4972 MEMASSSPRTAEEIFKDFTARRTAIVRALSQDVDEFYGLCDPDKENLCLYGHPNETWEVTLPAEEVPPELPEPALGINFARDGMNRRDWLSLVAVHSDSWLLSVAFYLGARLNRNERKRLFSFINDLPTVFEVVTEKKPVKDKPTADSGSKSRGSTKRSSDGQVKSNPKFDEGYDEEDDEHSDTLCGSCGGNYNADEFWIGCDICEKWFHGKCVKITPAKAESIKQYKCPQCSQRRGRP* 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev02g1847 239 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 183 233 IPR013083 -
Aev02g1847 239 SUPERFAMILY FYVE/PHD zinc finger 174 237 IPR011011 -
Aev02g1847 239 ProSitePatterns Zinc finger PHD-type signature. 186 232 IPR019786 -
Aev02g1847 239 PANTHER CPG BINDING PROTEIN 4 238 IPR045104 GO:0006355|GO:0042393
Aev02g1847 239 MobiDBLite consensus disorder prediction 149 163 - -
Aev02g1847 239 MobiDBLite consensus disorder prediction 138 176 - -
Aev02g1847 239 Pfam Alfin 10 135 IPR021998 GO:0006355|GO:0042393
Aev02g1847 239 Pfam PHD-finger 186 234 IPR019787 -
Aev02g1847 239 ProSiteProfiles Zinc finger PHD-type profile. 183 235 IPR019787 -
Aev02g1847 239 CDD PHD_AL_plant 185 235 IPR044104 -
Aev02g1847 239 PANTHER ZINC FINGER, FYVE/PHD-TYPE, ZINC FINGER, RING/FYVE/PHD-TYPE, ALFIN-RELATED 4 238 - -
Aev02g1847 239 SMART PHD_3 185 233 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev02g1847 Aev-Chr2 20294248 20297413 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev02g1847 1 238 Alfin-like Transcription Factor Family AT5G05610 75.833 1.11e-119 339
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Aev02g1847 Alfin 3.5e-67 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev02g1847 - - gmx:100793126 459.144
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev02g1847 02 20294248 20297413 Aev02g1847 02 20294248 20297413 ECH
Aev06g2931 06 30985814 30989701 Aev02g1847 02 20294248 20297413 PCT