Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev02g1831 ATGAAGAATGCAAAGGGCAAGGTTGTAGCAGCGAGGAGCTCGAAAGAAACACTGAAGCCTGTTGATGACCGAAAGGTCGGAAAGCGAAAGGCTGCTTATAAGCCTCCGAAGAAGGAGAAGATGGCCAAGAAAGATCCAAACAAACCGAAAAGACCACCCAGTGCTTTCTTTGTTTTCCTTGAGGAGTTTAGAAAGACCTTTAAGGCAGAGAATCCTAATGTGAAGGCTGTATCAGCTGTTGGAAAAGCTGGAGGAGAGAAATGGAAATCCTTGACTGATGCAGAGAAAGCTCCATATGAAGCCAAGGCCGCAAAAAGGAAAGCTGAATATGAAAAACTCATTAATGCCTACAATAAAAAGCAGGCAAGCTCGGCAGACGATGCAGAAGATGAATCGGACAAATCCAAGTCCGAAGTGAATGATGAGGATGATGAAGCTAGTGCAGAGGTAGTCTTAACTTCTTTTTTCTTGATTTTTCGTTTTCTTTAG 489 0.4315 MKNAKGKVVAARSSKETLKPVDDRKVGKRKAAYKPPKKEKMAKKDPNKPKRPPSAFFVFLEEFRKTFKAENPNVKAVSAVGKAGGEKWKSLTDAEKAPYEAKAAKRKAEYEKLINAYNKKQASSADDAEDESDKSKSEVNDEDDEASAEVVLTSFFLIFRFL* 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev02g1831 162 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 1 149 IPR031061 -
Aev02g1831 162 PANTHER HIGH MOBILITY GROUP B PROTEIN 1 1 149 - -
Aev02g1831 162 MobiDBLite consensus disorder prediction 123 141 - -
Aev02g1831 162 SUPERFAMILY HMG-box 33 119 IPR036910 -
Aev02g1831 162 PRINTS High mobility group (HMG1/HMG2) protein signature 102 122 - -
Aev02g1831 162 PRINTS High mobility group (HMG1/HMG2) protein signature 83 102 - -
Aev02g1831 162 PRINTS High mobility group (HMG1/HMG2) protein signature 18 38 - -
Aev02g1831 162 MobiDBLite consensus disorder prediction 120 147 - -
Aev02g1831 162 Coils Coil 100 120 - -
Aev02g1831 162 Gene3D High mobility group box domain 28 137 IPR036910 -
Aev02g1831 162 MobiDBLite consensus disorder prediction 1 53 - -
Aev02g1831 162 Pfam HMG (high mobility group) box 49 118 IPR009071 -
Aev02g1831 162 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 49 118 IPR009071 -
Aev02g1831 162 SMART hmgende2 48 119 IPR009071 -
Aev02g1831 162 CDD HMGB-UBF_HMG-box 49 112 - -
Aev02g1831 162 Coils Coil 125 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev02g1831 Aev-Chr2 20135664 20136903 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Aev02g1831 HMG_box 1.2e-24 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev02g1831 K25507 - gmx:100499704 179.874